13#include "AMReX_MultiFabUtil.H"
15#ifdef AMR_WIND_USE_W2A
17int evaluate_read_resize(
24 const amrex::Real wtinit,
25 const amrex::Real wdt,
26 const amrex::Real time)
31 if (new_ntime != ntime) {
35 if (new_ntime > ntime + 1) {
42 wtime = new_ntime * wdt + wtinit;
44 if (double_data == 1 && std::abs(wtime - time) <= 1e-10) {
50 if (t_last < -1e-10) {
57 if (std::abs(wtime - time) > 1e-10) {
65 }
else if (std::abs(t_last) < 1e-10) {
80void postprocess_velocity_mfab_liquid(
81 amrex::MultiFab& vel_mfab,
82 amrex::MultiFab& lvs_mfab,
83 const amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> dx)
85 auto vel = vel_mfab.arrays();
86 const auto phi = lvs_mfab.const_arrays();
88 vel_mfab, amrex::IntVect(3),
89 [=] AMREX_GPU_DEVICE(
int nbx,
int i,
int j,
int k)
noexcept {
91 const amrex::Real cell_length_2D =
92 std::sqrt(dx[0] * dx[0] + dx[2] * dx[2]);
93 if (phi[nbx](i, j, k) + cell_length_2D < 0) {
94 vel[nbx](i, j, k, 0) = 0.0;
95 vel[nbx](i, j, k, 1) = 0.0;
96 vel[nbx](i, j, k, 2) = 0.0;
99 amrex::Gpu::streamSynchronize();
102void postprocess_velocity_field_liquid(
105 amrex::Vector<amrex::Geometry>& geom_all)
108 for (
int lev = 0; lev < nlevels; ++lev) {
109 const auto& dx_lev = geom_all[lev].CellSizeArray();
110 postprocess_velocity_mfab_liquid(
111 vel_field(lev), lvs_field(lev), dx_lev);
115int update_offset_timestep(
const int ntime,
const int n0)
121 return (-ntime + n0);
124void populate_fields_all_levels(
126 amrex::Vector<amrex::Geometry>& geom_all,
133 bool no_EOF = wdata.rmodes.get_data(
141 amrex::Print() <<
"WARNING (waves2amr_ops): end of mode data file "
142 "detected, resetting to beginning of mode data.\n";
144 no_EOF = wdata.rmodes.get_data(
146 wdata.
mZ, wdata.
mFS);
150 "waves2amr_ops: end of mode data file detected after "
151 "resetting to beginning; please evaluate HOS_init_time "
152 "or HOS_init_timestep and check the length of the mode "
158 modes_hosgrid::copy_complex(wdata.
n0, wdata.
n1, wdata.
mFS, wdata.eta_mptr);
159 modes_hosgrid::populate_hos_eta(
160 wdata.rmodes, wdata.plan, wdata.eta_mptr, wdata.
sp_eta_vec);
162 for (
int iht = 0; iht < wdata.
indvec.size(); ++iht) {
164 amrex::Real ht = wdata.
hvec[wdata.
indvec[iht]];
166 modes_hosgrid::populate_hos_vel(
167 wdata.rmodes, ht, wdata.
mX, wdata.
mY, wdata.
mZ, wdata.plan,
168 wdata.u_mptr, wdata.v_mptr, wdata.w_mptr, wdata.
sp_u_vec,
173 interp_to_mfab::interp_eta_to_levelset_field(
176 interp_to_mfab::interp_velocity_to_field(
182 postprocess_velocity_field_liquid(vel_field, lvs_field, geom_all);
196 const ::amr_wind::utils::MultiParser& pp)
199#ifndef AMR_WIND_USE_W2A
202 "ocean_waves/W2AWaves: AMR-Wind was not built with Waves2AMR "
203 "support; associated wave data cannot be processed for relaxation "
206 amrex::ignore_unused(data, pp);
208 auto& wdata = data.
meta();
209 auto& info = data.
info();
214 "Current is specified as nonzero, but current is not yet "
215 "implemented for W2A Waves.");
218 pp.get(
"HOS_modes_filename", wdata.
modes_file);
219 pp.query(
"HOS_init_timestep", wdata.
ntime);
220 if (!pp.contains(
"HOS_init_timestep")) {
221 pp.query(
"HOS_init_time", wdata.
t_winit);
225 std::string fftw_planner_flag{
"estimate"};
226 pp.query(
"fftw_planner_flag", fftw_planner_flag);
228 amrex::Vector<amrex::Real> prob_lo_input(AMREX_SPACEDIM);
229 amrex::ParmParse pp_geom(
"geometry");
230 pp_geom.getarr(
"prob_lo", prob_lo_input);
235 amrex::Real dz0 = 0.;
236 pp.get(
"number_interp_points_in_z", nheights);
237 pp.get(
"interp_spacing_at_surface", dz0);
238 pp.query(
"number_interp_above_surface", nh_above);
241 bool file_exists = wdata.rmodes.initialize(wdata.
modes_file);
246 "Waves2AMR ReadInputsOp: modes file requested does not exist");
250 wdata.
dt_modes = wdata.rmodes.get_dtout();
269 int vsize = wdata.rmodes.get_vector_size();
270 double initval = 0.0;
271 wdata.
mX.resize(vsize, initval);
272 wdata.
mY.resize(vsize, initval);
273 wdata.
mZ.resize(vsize, initval);
274 wdata.
mFS.resize(vsize, initval);
277 wdata.
n0 = wdata.rmodes.get_first_dimension();
278 wdata.
n1 = wdata.rmodes.get_second_dimension();
280 wdata.
dx0 = wdata.rmodes.get_xlen() / wdata.
n0;
281 wdata.
dx1 = wdata.rmodes.get_ylen() / wdata.
n1;
283 const amrex::Real depth = wdata.rmodes.get_depth();
285 wdata.
dimL = wdata.rmodes.get_L();
288 (int)((wdata.rmodes.get_Tstop() + 1e-8) / wdata.
dt_modes);
296 <<
"WARNING (waves2amr_ops): available mode data exceeded, "
297 "resetting to beginning of mode data.\n";
301 if (std::abs(depth - (wdata.
zsl - prob_lo_input[2])) > 1e-3 * depth) {
303 <<
"WARNING: Mismatch between water depths from AMR-Wind "
304 "domain and HOS data interpreted by Waves2AMR. \n ^This "
305 "warning is not a concern when using waves as terrain.\n";
309 wdata.eta_mptr = modes_hosgrid::allocate_complex(wdata.
n0, wdata.
n1);
310 wdata.u_mptr = modes_hosgrid::allocate_complex(wdata.
n0, wdata.
n1);
311 wdata.v_mptr = modes_hosgrid::allocate_complex(wdata.
n0, wdata.
n1);
312 wdata.w_mptr = modes_hosgrid::allocate_complex(wdata.
n0, wdata.
n1);
315 auto plan_f = modes_hosgrid::planner_flags::estimate;
316 if (fftw_planner_flag ==
"patient") {
317 plan_f = modes_hosgrid::planner_flags::patient;
318 }
else if (fftw_planner_flag ==
"exhaustive") {
319 plan_f = modes_hosgrid::planner_flags::exhaustive;
320 }
else if (fftw_planner_flag ==
"measure") {
321 plan_f = modes_hosgrid::planner_flags::measure;
322 }
else if (!(fftw_planner_flag ==
"estimate")) {
324 <<
"WARNING (waves2amr_ops): invalid fftw_planner_flag "
325 "specified; defaulting to estimate (FFTW_ESTIMATE).\n";
328 wdata.plan = modes_hosgrid::plan_ifftw(
329 wdata.
n0, wdata.
n1, wdata.eta_mptr, plan_f);
333 int flag = interp_to_mfab::create_height_vector(
334 wdata.
hvec, nheights, dz0, wdata.
zsl, prob_lo_input[2], nh_above);
338 "Waves2AMR ReadInputsOp: create_height_vector error, failure "
340 std::to_string(flag));
344 bool no_EOF = wdata.rmodes.get_data(
352 <<
"WARNING (waves2amr_ops): end of mode data file "
353 "detected, resetting to beginning of mode data.\n";
355 no_EOF = wdata.rmodes.get_data(
361 "waves2amr_ops: end of mode data file detected after "
362 "resetting to beginning; please evaluate HOS_init_time "
363 "or HOS_init_timestep and check the length of the mode "
369 modes_hosgrid::copy_complex(
370 wdata.
n0, wdata.
n1, wdata.
mFS, wdata.eta_mptr);
372 static_cast<size_t>(wdata.
n0) *
static_cast<size_t>(wdata.
n1), 0.0);
373 modes_hosgrid::populate_hos_eta(
374 wdata.rmodes, wdata.plan, wdata.eta_mptr, wdata.
sp_eta_vec);
376 const auto n_hts = wdata.
hvec.size();
377 wdata.
sp_u_vec.resize(
static_cast<size_t>(wdata.
n0 * wdata.
n1) * n_hts);
378 wdata.
sp_v_vec.resize(
static_cast<size_t>(wdata.
n0 * wdata.
n1) * n_hts);
379 wdata.
sp_w_vec.resize(
static_cast<size_t>(wdata.
n0 * wdata.
n1) * n_hts);
380 for (
int iht = 0; iht < static_cast<int>(n_hts); ++iht) {
382 amrex::Real ht = wdata.
hvec[iht];
384 modes_hosgrid::populate_hos_vel(
385 wdata.rmodes, ht, wdata.
mX, wdata.
mY, wdata.
mZ, wdata.plan,
386 wdata.u_mptr, wdata.v_mptr, wdata.w_mptr, wdata.
sp_u_vec,
394 "w2a_velocity", AMREX_SPACEDIM, 3, 1);
398 w2a_velocity.set_default_fillpatch_bc(data.
sim().
time());
410 data,
int level,
const amrex::Geometry & geom,
bool multiphase_mode)
413#ifdef AMR_WIND_USE_W2A
414 auto& wdata = data.
meta();
416 auto& sim = data.
sim();
427 Field* levelset{
nullptr};
428 if (multiphase_mode) {
429 levelset = &sim.repo().get_field(
"levelset");
432 const auto& problo = geom.ProbLoArray();
433 const auto& probhi = geom.ProbHiArray();
434 const auto& dx = geom.CellSizeArray();
440 amrex::Vector<int> indvec(wdata.
hvec.size());
441 std::iota(indvec.begin(), indvec.end(), 0);
443 interp_to_mfab::interp_eta_to_levelset_multifab(
445 wdata.
sp_eta_vec, ow_levelset(level), problo, dx);
446 interp_to_mfab::interp_velocity_to_multifab(
451 postprocess_velocity_mfab_liquid(
452 ow_velocity(level), ow_levelset(level), dx);
455 const auto& ow_phi = ow_levelset(level).const_arrays();
456 const auto& ow_vel = ow_velocity(level).const_arrays();
457 const auto& vel = velocity(level).arrays();
458 const auto& phi_arrs = multiphase_mode
459 ? (*levelset)(level).arrays()
460 : amrex::MultiArray4<amrex::Real>();
462 const auto& w2a_phi = w2a_levelset(level).arrays();
463 const auto& w2a_vel = w2a_velocity(level).arrays();
465 const amrex::Real gen_length = wdata.
gen_length;
467 const amrex::Real zero_sea_level = wdata.
zsl;
469 const bool has_beach = wdata.
has_beach && multiphase_mode;
470 const bool init_wave_field = wdata.
init_wave_field || !multiphase_mode;
473 velocity(level), amrex::IntVect(3),
474 [=] AMREX_GPU_DEVICE(
int nbx,
int i,
int j,
int k)
noexcept {
475 const amrex::Real x = problo[0] + (i + 0.5) * dx[0];
476 const amrex::Real z = problo[2] + (k + 0.5) * dx[2];
480 ow_vel[nbx](i, j, k, 0), ow_vel[nbx](i, j, k, 1),
481 ow_vel[nbx](i, j, k, 2), ow_phi[nbx](i, j, k) + z};
486 const auto bulk = init_wave_field ? wave_sol : quiescent;
487 const auto outlet = has_beach ? quiescent : wave_sol;
490 x, problo[0], gen_length, probhi[0], beach_length, wave_sol,
493 const amrex::Real phi = local_profile[3] - z;
494 const amrex::Real cell_length_2D =
495 std::sqrt(dx[0] * dx[0] + dx[2] * dx[2]);
496 if (phi + cell_length_2D >= 0) {
497 vel[nbx](i, j, k, 0) = local_profile[0];
498 vel[nbx](i, j, k, 1) = local_profile[1];
499 vel[nbx](i, j, k, 2) = local_profile[2];
502 if (multiphase_mode) {
503 phi_arrs[nbx](i, j, k) = phi;
507 w2a_phi[nbx](i, j, k) = quiescent[3] - z;
508 w2a_vel[nbx](i, j, k, 0) = quiescent[0];
509 w2a_vel[nbx](i, j, k, 1) = quiescent[0];
510 w2a_vel[nbx](i, j, k, 2) = quiescent[0];
512 amrex::Gpu::streamSynchronize();
514 amrex::ignore_unused(data, level, geom, multiphase_mode);
526#ifdef AMR_WIND_USE_W2A
527 auto& wdata = data.
meta();
528 auto& sim = data.
sim();
540 auto nlevels = sim.repo().num_active_levels();
541 auto geom = sim.mesh().Geom();
544 amrex::Real t_last = wdata.
t_last;
547 bool read_flag =
false;
550 wdata.rmodes.time2step(time + wdata.
t_winit, wdata.
ntime);
551 int double_data = evaluate_read_resize(
563 <<
"WARNING (waves2amr_ops): available mode data exceeded, "
564 "resetting to beginning of mode data.\n";
582 bool flag_xlo =
false;
583 bool flag_xhi =
false;
586 (interp_to_mfab::get_local_height_indices(
587 wdata.
indvec, wdata.
hvec, ow_velocity.vec_ptrs(),
594 (interp_to_mfab::check_lateral_overlap_lo(
595 wdata.
gen_length, dir, ow_velocity.vec_ptrs(), geom) ==
601 (interp_to_mfab::check_lateral_overlap_hi(
613 if (flag_z && (flag_xlo || flag_xhi)) {
618 static_cast<size_t>(wdata.
n0) *
619 static_cast<size_t>(wdata.
n1),
622 static_cast<size_t>(wdata.
n0 * wdata.
n1) *
625 static_cast<size_t>(wdata.
n0 * wdata.
n1) *
628 static_cast<size_t>(wdata.
n0 * wdata.
n1) *
639 amrex::ParallelDescriptor::ReduceIntMax(wdata.
n_offset);
643 if (double_data == 1) {
645 populate_fields_all_levels(
646 wdata, geom, ow_levelset, ow_velocity, -1);
651 for (
int lev = nlevels - 1; lev > 0; --lev) {
653 ow_velocity(lev), ow_velocity(lev - 1), 0,
654 AMREX_SPACEDIM, sim.mesh().refRatio(lev - 1));
656 ow_levelset(lev), ow_levelset(lev - 1), 0, 1,
657 sim.mesh().refRatio(lev - 1));
660 ow_velocity.fillpatch(sim.time().new_time());
661 ow_levelset.fillpatch(sim.time().new_time());
665 }
else if (double_data == 2) {
669 ow_levelset.setVal(0.0, ow_levelset.num_grow()[0]);
670 ow_velocity.setVal(0.0, ow_levelset.num_grow()[0]);
677 populate_fields_all_levels(
678 wdata, geom, w2a_levelset, w2a_velocity);
683 for (
int lev = nlevels - 1; lev > 0; --lev) {
685 w2a_velocity(lev), w2a_velocity(lev - 1), 0, AMREX_SPACEDIM,
686 sim.mesh().refRatio(lev - 1));
687 w2a_velocity(lev - 1).FillBoundary(geom[lev - 1].periodicity());
689 w2a_levelset(lev), w2a_levelset(lev - 1), 0, 1,
690 sim.mesh().refRatio(lev - 1));
691 w2a_levelset(lev - 1).FillBoundary(geom[lev - 1].periodicity());
696 for (
int lev = 0; lev < nlevels; ++lev) {
697 auto phi = ow_levelset(lev).arrays();
698 auto vel = ow_velocity(lev).arrays();
699 const auto W2A_phi = w2a_levelset(lev).const_arrays();
700 const auto W2A_vel = w2a_velocity(lev).const_arrays();
702 const amrex::Real W2A_t = wdata.
t;
704 ow_levelset(lev), amrex::IntVect(3),
705 [=] AMREX_GPU_DEVICE(
int nbx,
int i,
int j,
int k)
noexcept {
708 (W2A_phi[nbx](i, j, k) - phi[nbx](i, j, k)) *
709 (time - t_last) / (W2A_t - t_last + 1e-16);
710 vel[nbx](i, j, k, 0) +=
711 (W2A_vel[nbx](i, j, k, 0) - vel[nbx](i, j, k, 0)) *
712 (time - t_last) / (W2A_t - t_last + 1e-16);
713 vel[nbx](i, j, k, 1) +=
714 (W2A_vel[nbx](i, j, k, 1) - vel[nbx](i, j, k, 1)) *
715 (time - t_last) / (W2A_t - t_last + 1e-16);
716 vel[nbx](i, j, k, 2) +=
717 (W2A_vel[nbx](i, j, k, 2) - vel[nbx](i, j, k, 2)) *
718 (time - t_last) / (W2A_t - t_last + 1e-16);
721 amrex::Gpu::streamSynchronize();
723 amrex::ignore_unused(data, time);
FieldRepo & repo()
Return the field repository.
Definition CFDSim.H:75
SimTime & time()
Return simulation time control.
Definition CFDSim.H:65
FieldRepo & repo() const
FieldRepo instance that manages this field.
Definition Field.H:159
void set_default_fillpatch_bc(const SimTime &time, const amrex::BCType::mathematicalBndryTypes bctype=amrex::BCType::hoextrap) noexcept
Definition Field.cpp:377
amrex::Vector< amrex::MultiFab * > vec_ptrs() noexcept
Return a vector of MultiFab pointers for all levels.
Definition Field.cpp:142
Field & declare_field(const std::string &name, const int ncomp=1, const int ngrow=0, const int nstates=1, const FieldLoc floc=FieldLoc::CELL)
Definition FieldRepo.cpp:83
Field & get_field(const std::string &name, const FieldState fstate=FieldState::New) const
Definition FieldRepo.cpp:149
int num_active_levels() const noexcept
Total number of levels currently active in the AMR mesh.
Definition FieldRepo.H:361
bool field_exists(const std::string &name, const FieldState fstate=FieldState::New) const
Definition FieldRepo.cpp:215
Definition OceanWavesTypes.H:59
OceanWavesTrait::MetaType & meta()
Definition OceanWavesTypes.H:89
CFDSim & sim()
Definition OceanWavesTypes.H:83
OceanWavesTrait::InfoType & info()
Definition OceanWavesTypes.H:86
static constexpr amrex::Real TIGHT_TOL
A tight tolerance.
Definition constants.H:19
Definition OceanWavesOps.H:8
void read_inputs(RelaxZonesBaseData &wdata, OceanWavesInfo &, const ::amr_wind::utils::MultiParser &pp)
Definition relaxation_zones_ops.cpp:15
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE WaveVec harmonize_profiles_1d(const amrex::Real x, const amrex::Real left_bdy, const amrex::Real left_length, const amrex::Real right_bdy, const amrex::Real right_length, const WaveVec left, const WaveVec bulk, const WaveVec right)
Definition wave_utils_K.H:67
amrex::GpuArray< amrex::Real, 4 > WaveVec
Definition wave_utils_K.H:9
bool has_beach
Definition RelaxationZones.H:36
bool has_outprofile
Definition RelaxationZones.H:37
amrex::Real beach_length
Definition RelaxationZones.H:27
bool init_wave_field
Definition RelaxationZones.H:32
amrex::Real current
Definition RelaxationZones.H:30
amrex::Real gen_length
Definition RelaxationZones.H:25
bool regrid_occurred
Definition RelaxationZones.H:41
amrex::Real zsl
Definition RelaxationZones.H:17
amrex::Real dimL
Definition W2AWaves.H:24
amrex::Real dt_modes
Definition W2AWaves.H:26
amrex::Gpu::DeviceVector< amrex::Real > sp_v_vec
Definition W2AWaves.H:69
std::vector< std::complex< double > > mFS
Definition W2AWaves.H:47
amrex::Vector< int > indvec
Definition W2AWaves.H:63
int n1
Definition W2AWaves.H:19
amrex::Gpu::DeviceVector< amrex::Real > sp_u_vec
Definition W2AWaves.H:69
int n_winit
Definition W2AWaves.H:34
amrex::Vector< amrex::Real > hvec
Definition W2AWaves.H:61
int n_offset
Definition W2AWaves.H:38
amrex::Real dx0
Definition W2AWaves.H:21
int ntime
Definition W2AWaves.H:32
std::vector< std::complex< double > > mX
Definition W2AWaves.H:47
amrex::Real t_last
Definition W2AWaves.H:42
amrex::Gpu::DeviceVector< amrex::Real > sp_w_vec
Definition W2AWaves.H:70
int n0
Definition W2AWaves.H:18
std::vector< std::complex< double > > mY
Definition W2AWaves.H:47
amrex::Real dx1
Definition W2AWaves.H:22
amrex::Real t_winit
Definition W2AWaves.H:30
int n_wstop
Definition W2AWaves.H:36
std::string modes_file
Definition W2AWaves.H:16
std::vector< std::complex< double > > mZ
Definition W2AWaves.H:47
amrex::Gpu::DeviceVector< amrex::Real > sp_eta_vec
Definition W2AWaves.H:69
bool do_interp
Definition W2AWaves.H:65
bool resize_flag
Definition W2AWaves.H:67
amrex::Real t
Definition W2AWaves.H:44
void operator()(W2AWaves::DataType &data, int level, const amrex::Geometry &geom, bool multiphase_mode)
Definition waves2amr_ops.H:408
Definition OceanWavesOps.H:14
void operator()(W2AWaves::DataType &data, const amrex::Real time)
Definition waves2amr_ops.H:523
Definition OceanWavesOps.H:17