ERF_EddyViscosity.H

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/** \file ERF_EddyViscosity.H */
 
#ifndef ERF_EDDY_VISCOSITY_H_
#define ERF_EDDY_VISCOSITY_H_
 
#include "AMReX_BCRec.H"
#include "ERF_SurfaceLayer.H"
#include "ERF_DataStruct.H"
#include "ERF_IndexDefines.H"
#include "ERF_Constants.H"
#include "ERF_EOS.H"
#include "ERF_EB.H"
 
#ifdef ERF_USE_SHOC
#include "ERF_ShocInterface.H"
#endif
 
void
ComputeTurbulentViscosity (amrex::Real dt,
                           const amrex::MultiFab& xvel ,
                           const amrex::MultiFab& yvel ,
                           amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Tau_lev,
                           amrex::MultiFab& cons_in,
                           const amrex::MultiFab& wdist,
                           amrex::MultiFab& eddyViscosity,
                           amrex::MultiFab& Hfx1,
                           amrex::MultiFab& Hfx2,
                           amrex::MultiFab& Hfx3,
                           amrex::MultiFab& Diss,
                           const amrex::Geometry& geom,
                           amrex::Vector<std::unique_ptr<amrex::MultiFab>>& mapfac,
                           const std::unique_ptr<amrex::MultiFab>& z_phys_nd,
                           const SolverChoice& solverChoice,
                           std::unique_ptr<SurfaceLayer>& SurfLayer,
                           const amrex::MultiFab* z_0,
                           const bool& use_terrain_fitted_coords,
                           const bool& use_moisture,
                           int level,
                           const amrex::BCRec* bc_ptr,
                           const eb_& ebfact,
                           bool vert_only = false);
 
void
ComputeTurbulentViscosityLES (amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Tau_lev,
                              const amrex::MultiFab& cons_in,
                              amrex::MultiFab& eddyViscosity,
                              amrex::MultiFab& Hfx1,
                              amrex::MultiFab& Hfx2,
                              amrex::MultiFab& Hfx3,
                              amrex::MultiFab& Diss,
                              const amrex::Geometry& geom,
                              bool use_terrain_fitted_coords,
                              amrex::Vector<std::unique_ptr<amrex::MultiFab>>& mapfac,
                              const std::unique_ptr<amrex::MultiFab>& z_phys_nd,
                              const TurbChoice& turbChoice,
                              const amrex::Real const_grav,
                              std::unique_ptr<SurfaceLayer>& SurfLayer,
                              const MoistureComponentIndices& moisture_indices,
                              const amrex::MultiFab* xvel = nullptr,
                              const amrex::MultiFab* yvel = nullptr);
 
void
ComputeTurbulentViscosityLES_EB (amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Tau_lev,
                              const amrex::MultiFab& cons_in,
                              amrex::MultiFab& eddyViscosity,
                              amrex::MultiFab& Hfx1,
                              amrex::MultiFab& Hfx2,
                              amrex::MultiFab& Hfx3,
                              const amrex::Geometry& geom,
                              amrex::Vector<std::unique_ptr<amrex::MultiFab>>& mapfac,
                              const TurbChoice& turbChoice,
                              const amrex::Real const_grav,
                              const SolverChoice& solverChoice,
                              std::unique_ptr<SurfaceLayer>& SurfLayer,
                              const MoistureComponentIndices& moisture_indices,
                              const eb_& ebfact,
                              const amrex::MultiFab* xvel = nullptr,
                              const amrex::MultiFab* yvel = nullptr);
 
AMREX_GPU_DEVICE
AMREX_FORCE_INLINE
amrex::Real
ComputeSmnSmn (int& i, int& j, int& k,
               const amrex::Array4<amrex::Real const>& tau11,
               const amrex::Array4<amrex::Real const>& tau22,
               const amrex::Array4<amrex::Real const>& tau33,
               const amrex::Array4<amrex::Real const>& tau12,
               const amrex::Array4<amrex::Real const>& tau13,
               const amrex::Array4<amrex::Real const>& tau23)
{
    amrex::Real s11bar = tau11(i,j,k);
    amrex::Real s22bar = tau22(i,j,k);
    amrex::Real s33bar = tau33(i,j,k);
    amrex::Real s12bar = 0.25 * ( tau12(i  , j  , k  ) + tau12(i  , j+1, k  )
                                + tau12(i+1, j  , k  ) + tau12(i+1, j+1, k  ) );
    amrex::Real s13bar = 0.25 * ( tau13(i  , j  , k  ) + tau13(i  , j  , k+1)
                                + tau13(i+1, j  , k  ) + tau13(i+1, j  , k+1) );
    amrex::Real s23bar = 0.25 * ( tau23(i  , j  , k  ) + tau23(i  , j  , k+1)
                                + tau23(i  , j+1, k  ) + tau23(i  , j+1, k+1) );
 
    amrex::Real SmnSmn = s11bar*s11bar + s22bar*s22bar + s33bar*s33bar
                       + 2.0*s12bar*s12bar + 2.0*s13bar*s13bar + 2.0*s23bar*s23bar;
 
    return SmnSmn;
}
 
AMREX_GPU_DEVICE
AMREX_FORCE_INLINE
amrex::Real
ComputeSmnSmn_EB (int& i, int& j, int& k,
               const amrex::Array4<amrex::Real const>& tau11,
               const amrex::Array4<amrex::Real const>& tau22,
               const amrex::Array4<amrex::Real const>& tau33,
               const amrex::Array4<amrex::Real const>& tau12,
               const amrex::Array4<amrex::Real const>& tau13,
               const amrex::Array4<amrex::Real const>& tau23,
               const amrex::Array4<const amrex::EBCellFlag>& c_cflag,
               const amrex::Array4<const amrex::EBCellFlag>& u_cflag,
               const amrex::Array4<const amrex::EBCellFlag>& v_cflag,
               const amrex::Array4<const amrex::EBCellFlag>& w_cflag)
{
    amrex::Real SmnSmn = 0.0;
    if (!c_cflag(i,j,k).isCovered()) {
        amrex::Real s11bar = tau11(i,j,k);
        amrex::Real s22bar = tau22(i,j,k);
        amrex::Real s33bar = tau33(i,j,k);
        amrex::Real s12bar = 0.0;
        amrex::Real s13bar = 0.0;
        amrex::Real s23bar = 0.0;
 
        amrex::Real count_s12 = 0.0;
        if (!u_cflag(i,j,k).isCovered() || !v_cflag(i,j,k).isCovered()) {
            s12bar += tau12(i,j,k);
            count_s12 += 1.0;
        }
        if (!u_cflag(i+1,j,k).isCovered() || !v_cflag(i,j,k).isCovered()) {
            s12bar += tau12(i+1,j,k);
            count_s12 += 1.0;
        }
        if (!u_cflag(i,j,k).isCovered() || !v_cflag(i,j+1,k).isCovered()) {
            s12bar += tau12(i,j+1,k);
            count_s12 += 1.0;
        }
        if (!u_cflag(i+1,j,k).isCovered() || !v_cflag(i,j+1,k).isCovered()) {
            s12bar += tau12(i+1,j+1,k);
            count_s12 += 1.0;
        }
        if (count_s12 > 0.0) {
            s12bar /= count_s12;
        }
 
        amrex::Real count_s13 = 0.0;
        if (!u_cflag(i,j,k).isCovered() || !w_cflag(i,j,k).isCovered()) {
            s13bar += tau13(i, j, k);
            count_s13 += 1.0;
        }
        if (!u_cflag(i,j,k).isCovered() || !w_cflag(i,j,k+1).isCovered()) {
            s13bar += tau13(i, j, k+1);
            count_s13 += 1.0;
        }
        if (!u_cflag(i+1,j,k).isCovered() || !w_cflag(i,j,k).isCovered()) {
            s13bar += tau13(i+1, j, k);
            count_s13 += 1.0;
        }
        if (!u_cflag(i+1,j,k).isCovered() || !w_cflag(i,j,k+1).isCovered()) {
            s13bar += tau13(i+1, j, k+1);
            count_s13 += 1.0;
        }
        if (count_s13 > 0.0) {
            s13bar /= count_s13;
        }
 
        amrex::Real count_s23 = 0.0;
        if (!v_cflag(i,j,k).isCovered() || !w_cflag(i,j,k).isCovered()) {
            s23bar += tau23(i, j, k);
            count_s23 += 1.0;
        }
        if (!v_cflag(i,j,k).isCovered() || !w_cflag(i,j,k+1).isCovered()) {
            s23bar += tau23(i, j, k+1);
            count_s23 += 1.0;
        }
        if (!v_cflag(i,j+1,k).isCovered() || !w_cflag(i,j,k).isCovered()) {
            s23bar += tau23(i, j+1, k);
            count_s23 += 1.0;
        }
        if (!v_cflag(i,j+1,k).isCovered() || !w_cflag(i,j,k+1).isCovered()) {
            s23bar += tau23(i, j+1, k+1);
            count_s23 += 1.0;
        }
        if (count_s23 > 0.0) {
            s23bar /= count_s23;
        }
 
        SmnSmn = s11bar*s11bar + s22bar*s22bar + s33bar*s33bar
               + 2.0*s12bar*s12bar + 2.0*s13bar*s13bar + 2.0*s23bar*s23bar;
    }
 
    return SmnSmn;
}
 
AMREX_GPU_DEVICE
AMREX_FORCE_INLINE
amrex::Real
ComputeSmnSmn2D (int& i, int& j, int& k,
                 const amrex::Array4<amrex::Real const>& tau11,
                 const amrex::Array4<amrex::Real const>& tau22,
                 const amrex::Array4<amrex::Real const>& tau12)
{
    amrex::Real sdiff = tau11(i,j,k) - tau22(i,j,k);
    amrex::Real s12bar = 0.25 * ( tau12(i  , j  , k  ) + tau12(i  , j+1, k  )
                                + tau12(i+1, j  , k  ) + tau12(i+1, j+1, k  ) );
    return 0.5 * sdiff*sdiff + 2.0*s12bar*s12bar;
}
#endif