ERF
Energy Research and Forecasting: An Atmospheric Modeling Code
ERF_SrcHeaders.H
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1 #ifndef ERF_INTEGRATION_H_
2 #define ERF_INTEGRATION_H_
3 
4 #include <AMReX_MultiFab.H>
5 #include <AMReX_EBMultiFabUtil.H>
6 
7 #include "ERF_DataStruct.H"
8 #include "ERF_InputSoundingData.H"
9 #include "ERF_TurbPertStruct.H"
10 #include "ERF_EB.H"
11 
12 /**
13  * Function for computing the buoyancy term to be used in the evolution
14  * equation for the z-component of momentum in the slow integrator. There
15  * are three options for how buoyancy is computed (two are the same in the absence of moisture).
16  */
17 void make_buoyancy (int level,
18  const amrex::Vector<amrex::MultiFab>& S_data,
19  const amrex::MultiFab & S_prim,
20  const amrex::MultiFab & qt,
21  amrex::MultiFab& buoyancy,
22  const amrex::Geometry geom,
23  const SolverChoice& solverChoice,
24  const amrex::MultiFab& base_state,
25  const int n_qstate,
26  const eb_& ebfact,
27  const int anelastic);
28 
29 void make_gradp_pert (int level,
30  const SolverChoice& solverChoice,
31  const amrex::Geometry& geom,
32  amrex::Vector<amrex::MultiFab>& S_data,
33  const amrex::MultiFab& p0,
34  const amrex::MultiFab& z_phys_nd,
35  const amrex::MultiFab& z_phys_cc,
36  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& mapfac,
37  const eb_& ebfact,
38  amrex::Vector<amrex::MultiFab>& gradp);
39 
40 void compute_gradp (const amrex::MultiFab& p,
41  const amrex::Geometry& geom,
42  const amrex::MultiFab& z_phys_nd,
43  const amrex::MultiFab& z_phys_cc,
44  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& mapfac,
45  const eb_& ebfact,
46  amrex::Vector<amrex::MultiFab>& gradp,
47  const SolverChoice& solverChoice);
48 
49 void compute_gradp_interpz (const amrex::MultiFab& p,
50  const amrex::Geometry& geom,
51  const amrex::MultiFab& z_phys_nd,
52  const amrex::MultiFab& z_phys_cc,
53  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& mapfac,
54  amrex::Vector<amrex::MultiFab>& gradp,
55  const SolverChoice& solverChoice);
56 
57 void make_sources (int level, int nrk,
58  amrex::Real dt, amrex::Real time,
59  const amrex::Vector<amrex::MultiFab>& S_data,
60  const amrex::MultiFab& S_prim,
61  amrex::MultiFab& cc_source,
62  const amrex::MultiFab& base_state,
63  const amrex::MultiFab* z_phys_cc,
64  const amrex::MultiFab& xvel,
65  const amrex::MultiFab& yvel,
66  const amrex::MultiFab* qheating_rates,
67  amrex::MultiFab* terrain_blank,
68  const amrex::Geometry geom,
69  const SolverChoice& solverChoice,
70  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& mapfac,
71  const amrex::MultiFab* rhotheta_src,
72  const amrex::MultiFab* rhoqt_src,
73  const amrex::Real* dptr_wbar_sub,
74  const amrex::Vector<amrex::Real*> d_rayleigh_ptrs_at_lev,
75  const amrex::Real* sinesq_at_lev_d,
76  const amrex::MultiFab* surface_state_at_lev,
77  InputSoundingData& input_sounding_data,
78  TurbulentPerturbation& turbPert,
79  bool is_slow_step);
80 
81 void make_mom_sources (amrex::Real time,
82  amrex::Real dt,
83  const amrex::Vector<amrex::MultiFab>& S_data,
84  const amrex::MultiFab* z_phys_nd,
85  const amrex::MultiFab* z_phys_cc,
86  amrex::Vector<amrex::Real>& stretched_dz_h,
87  const amrex::MultiFab& xvel,
88  const amrex::MultiFab& yvel,
89  const amrex::MultiFab& zvel,
90  amrex::MultiFab& xmom_source,
91  amrex::MultiFab& ymom_source,
92  amrex::MultiFab& zmom_source,
93  const amrex::MultiFab& base_state,
94  amrex::MultiFab* forest_drag,
95  amrex::MultiFab* terrain_blank,
96  amrex::MultiFab* cosPhi_mf,
97  amrex::MultiFab* sinPhi_mf,
98  const amrex::Geometry geom,
99  const SolverChoice& solverChoice,
100  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& mapfac,
101  const amrex::Real* dptr_rhotheta_src,
102  const amrex::Real* dptr_rhoqt_src,
103  const amrex::Real* dptr_wbar_sub,
104  const amrex::Vector<amrex::Real*> d_rayleigh_ptrs_at_lev,
105  const amrex::Real* sinesq_at_lev_d,
106  const amrex::Real* sinesq_stag_at_lev_d,
107  const amrex::Vector<amrex::Real*> d_sponge_ptrs_at_lev,
108  const amrex::Vector<amrex::MultiFab>* forecast_state_at_lev,
109  const amrex::MultiFab* surface_state_at_lev,
110  InputSoundingData& input_sounding_data,
111  bool is_slow_step);
112 
113 void add_thin_body_sources (amrex::MultiFab& xmom_source,
114  amrex::MultiFab& ymom_source,
115  amrex::MultiFab& zmom_source,
116  std::unique_ptr<amrex::iMultiFab>& xflux_imask_lev,
117  std::unique_ptr<amrex::iMultiFab>& yflux_imask_lev,
118  std::unique_ptr<amrex::iMultiFab>& zflux_imask_lev,
119  std::unique_ptr<amrex::MultiFab>& thin_xforce_lev,
120  std::unique_ptr<amrex::MultiFab>& thin_yforce_lev,
121  std::unique_ptr<amrex::MultiFab>& thin_zforce_lev);
122 
123 #if defined(ERF_USE_NETCDF)
124 void
125 moist_set_rhs (const amrex::Geometry& geom,
126  const amrex::Box& tbx,
127  const amrex::Array4<amrex::Real const>& old_cons,
128  const amrex::Array4<amrex::Real const>& new_cons,
129  const amrex::Array4<amrex::Real >& cell_rhs,
130  const amrex::Real& bdy_time_interval,
131  const amrex::Real& new_stage_time,
132  const amrex::Real& dt,
133  const amrex::Real& stop_time_elapsed,
134  int width, int set_width, bool do_upwind,
135  const amrex::Box& domain,
136  amrex::Vector<amrex::Vector<amrex::FArrayBox>>& bdy_data_xlo,
137  amrex::Vector<amrex::Vector<amrex::FArrayBox>>& bdy_data_xhi,
138  amrex::Vector<amrex::Vector<amrex::FArrayBox>>& bdy_data_ylo,
139  amrex::Vector<amrex::Vector<amrex::FArrayBox>>& bdy_data_yhi);
140 #endif
141 
142 void ApplySpongeZoneBCsForCC (const SpongeChoice& spongeChoice,
143  const amrex::Geometry geom,
144  const amrex::Box& bx,
145  const amrex::Array4<amrex::Real>& cell_rhs,
146  const amrex::Array4<const amrex::Real>& cell_data,
147  const amrex::Array4<const amrex::Real>& r0,
148  const amrex::Array4<const amrex::Real>& z_phys_cc);
149 
150 void ApplySpongeZoneBCsForMom (const SpongeChoice& spongeChoice,
151  const amrex::Geometry geom,
152  const amrex::Box& tbx,
153  const amrex::Box& tby,
154  const amrex::Box& tbz,
155  const amrex::Array4<amrex::Real>& rho_u_rhs,
156  const amrex::Array4<amrex::Real>& rho_v_rhs,
157  const amrex::Array4<amrex::Real>& rho_w_rhs,
158  const amrex::Array4<const amrex::Real>& rho_u,
159  const amrex::Array4<const amrex::Real>& rho_v,
160  const amrex::Array4<const amrex::Real>& rho_w,
161  const amrex::Array4<const amrex::Real>& r0,
162  const amrex::Array4<const amrex::Real>& z_phys_nd,
163  const amrex::Array4<const amrex::Real>& z_phys_cc);
164 
165 void ApplySpongeZoneBCsForMom_ReadFromFile (const SpongeChoice& spongeChoice,
166  const amrex::Geometry geom,
167  const amrex::Box& tbx,
168  const amrex::Box& tby,
169  const amrex::Array4<const amrex::Real>& cell_data,
170  const amrex::Array4<const amrex::Real>& z_phys_cc,
171  const amrex::Array4<amrex::Real>& rho_u_rhs,
172  const amrex::Array4<amrex::Real>& rho_v_rhs,
173  const amrex::Array4<const amrex::Real>& rho_u,
174  const amrex::Array4<const amrex::Real>& rho_v,
175  const amrex::Vector<amrex::Real*> d_sponge_ptrs_at_lev);
176 
177 void ApplyBndryForcing_Forecast (const SolverChoice& solverChoice,
178  const amrex::Geometry geom,
179  const amrex::Box& tbx,
180  const amrex::Box& tby,
181  const amrex::Box& tbz,
182  const amrex::Array4<const amrex::Real>& z_phys_nd,
183  const amrex::Array4<amrex::Real>& rho_u_rhs,
184  const amrex::Array4<amrex::Real>& rho_v_rhs,
185  const amrex::Array4<amrex::Real>& rho_w_rhs,
186  const amrex::Array4<const amrex::Real>& rho_u,
187  const amrex::Array4<const amrex::Real>& rho_v,
188  const amrex::Array4<const amrex::Real>& rho_w,
189  const amrex::Array4<const amrex::Real>& rho_u_initial_state,
190  const amrex::Array4<const amrex::Real>& rho_v_initial_state,
191  const amrex::Array4<const amrex::Real>& rho_w_initial_state,
192  const amrex::Array4<const amrex::Real>& cons_initial_state);
193 
194 void
195 ApplySurfaceTreatment_BulkCoeff_Mom (const amrex::Box& tbx,
196  const amrex::Box& tby,
197  const amrex::Array4<amrex::Real>& rho_u_rhs,
198  const amrex::Array4<amrex::Real>& rho_v_rhs,
199  const amrex::Array4<const amrex::Real>& rho_u,
200  const amrex::Array4<const amrex::Real>& rho_v,
201  const amrex::Array4<const amrex::Real>& cons_state,
202  const amrex::Array4<const amrex::Real>& z_phys_nd,
203  const amrex::Array4<const amrex::Real>& surface_state_arr);
204 
205 void
206 ApplySurfaceTreatment_BulkCoeff_CC (const amrex::Box& bx,
207  const amrex::Array4<amrex::Real>& cell_rhs,
208  const amrex::Array4<const amrex::Real>& cons_state,
209  const amrex::Array4<const amrex::Real>& z_phys_cc,
210  const amrex::Array4<const amrex::Real>& surface_state_arr);
211 
212 #endif
ERF_DataStruct.H
ERF_EB.H
ERF_InputSoundingData.H
Real
amrex::Real Real
Definition: ERF_ShocInterface.H:19
make_gradp_pert
void make_gradp_pert(int level, const SolverChoice &solverChoice, const amrex::Geometry &geom, amrex::Vector< amrex::MultiFab > &S_data, const amrex::MultiFab &p0, const amrex::MultiFab &z_phys_nd, const amrex::MultiFab &z_phys_cc, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &mapfac, const eb_ &ebfact, amrex::Vector< amrex::MultiFab > &gradp)
ApplySurfaceTreatment_BulkCoeff_Mom
void ApplySurfaceTreatment_BulkCoeff_Mom(const amrex::Box &tbx, const amrex::Box &tby, const amrex::Array4< amrex::Real > &rho_u_rhs, const amrex::Array4< amrex::Real > &rho_v_rhs, const amrex::Array4< const amrex::Real > &rho_u, const amrex::Array4< const amrex::Real > &rho_v, const amrex::Array4< const amrex::Real > &cons_state, const amrex::Array4< const amrex::Real > &z_phys_nd, const amrex::Array4< const amrex::Real > &surface_state_arr)
make_sources
void make_sources(int level, int nrk, amrex::Real dt, amrex::Real time, const amrex::Vector< amrex::MultiFab > &S_data, const amrex::MultiFab &S_prim, amrex::MultiFab &cc_source, const amrex::MultiFab &base_state, const amrex::MultiFab *z_phys_cc, const amrex::MultiFab &xvel, const amrex::MultiFab &yvel, const amrex::MultiFab *qheating_rates, amrex::MultiFab *terrain_blank, const amrex::Geometry geom, const SolverChoice &solverChoice, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &mapfac, const amrex::MultiFab *rhotheta_src, const amrex::MultiFab *rhoqt_src, const amrex::Real *dptr_wbar_sub, const amrex::Vector< amrex::Real * > d_rayleigh_ptrs_at_lev, const amrex::Real *sinesq_at_lev_d, const amrex::MultiFab *surface_state_at_lev, InputSoundingData &input_sounding_data, TurbulentPerturbation &turbPert, bool is_slow_step)
compute_gradp
void compute_gradp(const amrex::MultiFab &p, const amrex::Geometry &geom, const amrex::MultiFab &z_phys_nd, const amrex::MultiFab &z_phys_cc, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &mapfac, const eb_ &ebfact, amrex::Vector< amrex::MultiFab > &gradp, const SolverChoice &solverChoice)
ApplyBndryForcing_Forecast
void ApplyBndryForcing_Forecast(const SolverChoice &solverChoice, const amrex::Geometry geom, const amrex::Box &tbx, const amrex::Box &tby, const amrex::Box &tbz, const amrex::Array4< const amrex::Real > &z_phys_nd, const amrex::Array4< amrex::Real > &rho_u_rhs, const amrex::Array4< amrex::Real > &rho_v_rhs, const amrex::Array4< amrex::Real > &rho_w_rhs, const amrex::Array4< const amrex::Real > &rho_u, const amrex::Array4< const amrex::Real > &rho_v, const amrex::Array4< const amrex::Real > &rho_w, const amrex::Array4< const amrex::Real > &rho_u_initial_state, const amrex::Array4< const amrex::Real > &rho_v_initial_state, const amrex::Array4< const amrex::Real > &rho_w_initial_state, const amrex::Array4< const amrex::Real > &cons_initial_state)
add_thin_body_sources
void add_thin_body_sources(amrex::MultiFab &xmom_source, amrex::MultiFab &ymom_source, amrex::MultiFab &zmom_source, std::unique_ptr< amrex::iMultiFab > &xflux_imask_lev, std::unique_ptr< amrex::iMultiFab > &yflux_imask_lev, std::unique_ptr< amrex::iMultiFab > &zflux_imask_lev, std::unique_ptr< amrex::MultiFab > &thin_xforce_lev, std::unique_ptr< amrex::MultiFab > &thin_yforce_lev, std::unique_ptr< amrex::MultiFab > &thin_zforce_lev)
make_buoyancy
void make_buoyancy(int level, const amrex::Vector< amrex::MultiFab > &S_data, const amrex::MultiFab &S_prim, const amrex::MultiFab &qt, amrex::MultiFab &buoyancy, const amrex::Geometry geom, const SolverChoice &solverChoice, const amrex::MultiFab &base_state, const int n_qstate, const eb_ &ebfact, const int anelastic)
compute_gradp_interpz
void compute_gradp_interpz(const amrex::MultiFab &p, const amrex::Geometry &geom, const amrex::MultiFab &z_phys_nd, const amrex::MultiFab &z_phys_cc, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &mapfac, amrex::Vector< amrex::MultiFab > &gradp, const SolverChoice &solverChoice)
ApplySpongeZoneBCsForMom_ReadFromFile
void ApplySpongeZoneBCsForMom_ReadFromFile(const SpongeChoice &spongeChoice, const amrex::Geometry geom, const amrex::Box &tbx, const amrex::Box &tby, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &z_phys_cc, const amrex::Array4< amrex::Real > &rho_u_rhs, const amrex::Array4< amrex::Real > &rho_v_rhs, const amrex::Array4< const amrex::Real > &rho_u, const amrex::Array4< const amrex::Real > &rho_v, const amrex::Vector< amrex::Real * > d_sponge_ptrs_at_lev)
ApplySurfaceTreatment_BulkCoeff_CC
void ApplySurfaceTreatment_BulkCoeff_CC(const amrex::Box &bx, const amrex::Array4< amrex::Real > &cell_rhs, const amrex::Array4< const amrex::Real > &cons_state, const amrex::Array4< const amrex::Real > &z_phys_cc, const amrex::Array4< const amrex::Real > &surface_state_arr)
ApplySpongeZoneBCsForCC
void ApplySpongeZoneBCsForCC(const SpongeChoice &spongeChoice, const amrex::Geometry geom, const amrex::Box &bx, const amrex::Array4< amrex::Real > &cell_rhs, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &r0, const amrex::Array4< const amrex::Real > &z_phys_cc)
make_mom_sources
void make_mom_sources(amrex::Real time, amrex::Real dt, const amrex::Vector< amrex::MultiFab > &S_data, const amrex::MultiFab *z_phys_nd, const amrex::MultiFab *z_phys_cc, amrex::Vector< amrex::Real > &stretched_dz_h, const amrex::MultiFab &xvel, const amrex::MultiFab &yvel, const amrex::MultiFab &zvel, amrex::MultiFab &xmom_source, amrex::MultiFab &ymom_source, amrex::MultiFab &zmom_source, const amrex::MultiFab &base_state, amrex::MultiFab *forest_drag, amrex::MultiFab *terrain_blank, amrex::MultiFab *cosPhi_mf, amrex::MultiFab *sinPhi_mf, const amrex::Geometry geom, const SolverChoice &solverChoice, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &mapfac, const amrex::Real *dptr_rhotheta_src, const amrex::Real *dptr_rhoqt_src, const amrex::Real *dptr_wbar_sub, const amrex::Vector< amrex::Real * > d_rayleigh_ptrs_at_lev, const amrex::Real *sinesq_at_lev_d, const amrex::Real *sinesq_stag_at_lev_d, const amrex::Vector< amrex::Real * > d_sponge_ptrs_at_lev, const amrex::Vector< amrex::MultiFab > *forecast_state_at_lev, const amrex::MultiFab *surface_state_at_lev, InputSoundingData &input_sounding_data, bool is_slow_step)
ApplySpongeZoneBCsForMom
void ApplySpongeZoneBCsForMom(const SpongeChoice &spongeChoice, const amrex::Geometry geom, const amrex::Box &tbx, const amrex::Box &tby, const amrex::Box &tbz, const amrex::Array4< amrex::Real > &rho_u_rhs, const amrex::Array4< amrex::Real > &rho_v_rhs, const amrex::Array4< amrex::Real > &rho_w_rhs, const amrex::Array4< const amrex::Real > &rho_u, const amrex::Array4< const amrex::Real > &rho_v, const amrex::Array4< const amrex::Real > &rho_w, const amrex::Array4< const amrex::Real > &r0, const amrex::Array4< const amrex::Real > &z_phys_nd, const amrex::Array4< const amrex::Real > &z_phys_cc)
ERF_TurbPertStruct.H
eb_
Definition: ERF_EB.H:13
MicVar_Kess::qt
@ qt
Definition: ERF_Kessler.H:27
Vars::xvel
@ xvel
Definition: ERF_IndexDefines.H:141
Vars::zvel
@ zvel
Definition: ERF_IndexDefines.H:143
Vars::yvel
@ yvel
Definition: ERF_IndexDefines.H:142
module_model_constants::p0
real(c_double), parameter p0
Definition: ERF_module_model_constants.F90:40
InputSoundingData
Definition: ERF_InputSoundingData.H:22
SolverChoice
Definition: ERF_DataStruct.H:129
SpongeChoice
Definition: ERF_SpongeStruct.H:15
TurbulentPerturbation
Definition: ERF_TurbPertStruct.H:22