Function for computing the implicit contribution to the vertical diffusion of momentum, with a vertically stretched grid over flat terrain.
This function (explicitly instantiated below) handles staggering in x, y, or z through the template parameter, stagdir.
229 BL_PROFILE_VAR(
"ImplicitDiffForMom_S()",ImplicitDiffForMom_S);
246 constexpr
int ioff = (stagdir == 0) ? 1 : 0;
247 constexpr
int joff = (stagdir == 1) ? 1 : 0;
250 int ilo = bx.smallEnd(0);
251 int ihi = bx.bigEnd(0);
252 int jlo = bx.smallEnd(1);
253 int jhi = bx.bigEnd(1);
254 int klo = bx.smallEnd(2);
255 int khi = bx.bigEnd(2);
256 amrex::ignore_unused(ilo, ihi, jlo, jhi);
260 amrex::FArrayBox RHS_fab, soln_fab, coeffG_fab;
261 RHS_fab.resize(bx,1, amrex::The_Async_Arena());
262 soln_fab.resize(bx,1, amrex::The_Async_Arena());
263 coeffG_fab.resize(bx,1, amrex::The_Async_Arena());
264 auto const& RHS_a = RHS_fab.array();
265 auto const& soln_a = soln_fab.array();
266 auto const& coeffG_a = coeffG_fab.array();
268 auto dz_ptr = stretched_dz_d.data();
276 amrex::ignore_unused(foextrap_on_zhi);
279 "Unexpected lower BC used with implicit vertical diffusion");
281 "Unexpected upper BC used with implicit vertical diffusion");
282 if (stagdir < 2 && (ext_dir_on_zlo || ext_dir_on_zhi)) {
283 amrex::Warning(
"No-slip walls have not been fully tested");
286 Real Fact = implicit_fac * dt;
289 ParallelFor(makeSlab(bx,2,0), [=] AMREX_GPU_DEVICE (
int i,
int j,
int)
292 for (
int j(jlo); j<=jhi; ++j) {
293 for (
int i(ilo); i<=ihi; ++i) {
330 Real rhoface, rhoAlpha_lo, rhoAlpha_hi;
331 Real dz_inv, dz_inv_lo, dz_inv_hi;
332 Real a_tmp, b_tmp, c_tmp, inv_b2_tmp;
336 cell_data, mu_turb, mu_eff,
339 dz_inv =
one / dz_ptr[klo];
341 dz_inv_hi =
two / (dz_ptr[klo] + dz_ptr[klo+1]);
344 c_tmp = -Fact * gfac * rhoAlpha_hi * dz_inv_hi * dz_inv;
346 RHS_a(i,j,klo) = face_data(i,j,klo);
349 if (ext_dir_on_zlo) {
350 RHS_a(i,j,klo) += Fact * gfac * (tau_corr(i,j,klo+1) - tau_corr(i,j,klo)) * dz_inv;
355 a_tmp = -
two * Fact * rhoAlpha_lo * dz_inv_lo * dz_inv;
356 RHS_a(i,j,klo) +=
two * rhoAlpha_lo * face_data(i,j,klo-1) * dz_inv_lo * dz_inv;
358 }
else if (use_SurfLayer) {
360 RHS_a(i,j,klo) += Fact * gfac * (tau_corr(i,j,klo+1) - tau(i,j,klo)) * dz_inv;
361 RHS_a(i,j,klo) += Fact * dz_inv * tau(i,j,klo);
364 b_tmp = rhoface - a_tmp - c_tmp;
367 RHS_a(i,j,klo) /= b_tmp;
368 coeffG_a(i,j,klo) = c_tmp / b_tmp;
373 for (
int k(klo+1); k <
khi; k++) {
376 cell_data, mu_turb, mu_eff,
379 dz_inv =
one / dz_ptr[k];
380 dz_inv_lo =
two / (dz_ptr[k] + dz_ptr[k-1]);
381 dz_inv_hi =
two / (dz_ptr[k] + dz_ptr[k+1]);
383 a_tmp = -Fact * rhoAlpha_lo * dz_inv_lo * dz_inv;
384 c_tmp = -Fact * rhoAlpha_hi * dz_inv_hi * dz_inv;
385 b_tmp = rhoface - a_tmp - c_tmp;
386 inv_b2_tmp =
one / (b_tmp - a_tmp * coeffG_a(i,j,k-1));
388 RHS_a(i,j,k) = face_data(i,j,k);
389 RHS_a(i,j,k) += Fact * gfac * (tau_corr(i,j,k+1) - tau_corr(i,j,k)) * dz_inv;
391 RHS_a(i,j,k) = (RHS_a(i,j,k) - a_tmp * RHS_a(i,j,k-1)) * inv_b2_tmp;
392 coeffG_a(i,j,k) = c_tmp * inv_b2_tmp;
400 cell_data, mu_turb, mu_eff,
403 dz_inv =
one / dz_ptr[
khi];
404 dz_inv_lo =
two / (dz_ptr[
khi] + dz_ptr[
khi-1]);
407 a_tmp = -Fact * gfac * rhoAlpha_lo * dz_inv_lo * dz_inv;
410 RHS_a(i,j,
khi) = face_data(i,j,
khi);
411 RHS_a(i,j,
khi) += Fact * gfac * (tau_corr(i,j,
khi+1) - tau_corr(i,j,
khi)) * dz_inv;
414 if (ext_dir_on_zhi) {
419 c_tmp = -
two * Fact * rhoAlpha_hi * dz_inv_hi * dz_inv;
420 RHS_a(i,j,
khi) +=
two * rhoAlpha_hi * face_data(i,j,
khi+1) * dz_inv_hi * dz_inv;
424 b_tmp = rhoface - a_tmp - c_tmp;
425 inv_b2_tmp =
one / (b_tmp - a_tmp * coeffG_a(i,j,
khi-1));
428 soln_a(i,j,
khi) = (RHS_a(i,j,
khi) - a_tmp * RHS_a(i,j,
khi-1)) * inv_b2_tmp;
433 for (
int k(
khi-1); k>=klo; --k) {
434 soln_a(i,j,k) = RHS_a(i,j,k) - coeffG_a(i,j,k) * soln_a(i,j,k+1);
439 for (
int k(klo); k<=
khi; ++k) {
441 face_data(i,j,k) = rhoface * soln_a(i,j,k);
constexpr amrex::Real three
Definition: ERF_Constants.H:9
constexpr amrex::Real two
Definition: ERF_Constants.H:8
constexpr amrex::Real one
Definition: ERF_Constants.H:7
constexpr amrex::Real zero
Definition: ERF_Constants.H:6
constexpr amrex::Real myhalf
Definition: ERF_Constants.H:11
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE void getRhoAlphaForFaces(int i, int j, int k, int ioff, int joff, amrex::Real &rhoAlpha_lo, amrex::Real &rhoAlpha_hi, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &mu_turb, const amrex::Real mu_eff, bool l_consA, bool l_turb)
Definition: ERF_GetRhoAlphaForFaces.H:5
#define Rho_comp
Definition: ERF_IndexDefines.H:36
const int khi
Definition: ERF_InitCustomPert_Bubble.H:21
ParallelFor(bx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept { const auto prob_lo=geomdata.ProbLo();const auto dx=geomdata.CellSize();const Real x=(prob_lo[0]+(i+myhalf) *dx[0])/mf_m(i, j, 0);const Real z=z_cc(i, j, k);Real L=std::sqrt(std::pow((x - x_c)/x_r, 2)+std::pow((z - z_c)/z_r, 2));if(L<=one) { Real dT=T_pert *(std::cos(PI *L)+one)/two;Real Tbar_hse=p_hse(i, j, k)/(R_d *r_hse(i, j, k));Real theta_perturbed=(Tbar_hse+dT) *std::pow(p_0/p_hse(i, j, k), rdOcp);Real theta_0=(Tbar_hse) *std::pow(p_0/p_hse(i, j, k), rdOcp);if(const_rho) { state_pert(i, j, k, RhoTheta_comp)=r_hse(i, j, k) *(theta_perturbed - theta_0);} else { state_pert(i, j, k, Rho_comp)=getRhoThetagivenP(p_hse(i, j, k))/theta_perturbed - r_hse(i, j, k);} } })
bool l_turb
Definition: ERF_SetupVertDiff.H:9
bool l_consA
Definition: ERF_SetupVertDiff.H:8
AMREX_ASSERT_WITH_MESSAGE(wbar_cutoff_min > wbar_cutoff_max, "ERROR: wbar_cutoff_min < wbar_cutoff_max")
@ xvel_bc
Definition: ERF_IndexDefines.H:87
@ foextrap
Definition: ERF_IndexDefines.H:226
@ ext_dir
Definition: ERF_IndexDefines.H:227
@ ext_dir_prim
Definition: ERF_IndexDefines.H:229
Definition: ERF_DiffStruct.H:19
amrex::Real rho0_trans
Definition: ERF_DiffStruct.H:91
MolecDiffType molec_diff_type
Definition: ERF_DiffStruct.H:84
amrex::Real dynamic_viscosity
Definition: ERF_DiffStruct.H:96
DiffChoice diffChoice
Definition: ERF_DataStruct.H:1088
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:1091
Definition: ERF_TurbStruct.H:42
bool use_kturb
Definition: ERF_TurbStruct.H:424