ERF
Energy Research and Forecasting: An Atmospheric Modeling Code
ERF_SlowRhsPre.cpp File Reference
#include "AMReX_MultiFab.H"
#include "AMReX_iMultiFab.H"
#include "AMReX_ArrayLim.H"
#include "AMReX_BCRec.H"
#include "AMReX_GpuContainers.H"
#include "AMReX_GpuPrint.H"
#include "ERF_TI_slow_headers.H"
#include "ERF_ShocDriver.H"
#include "ERF_EOS.H"
#include "ERF_Utils.H"
#include "ERF_Diffusion.H"
#include "ERF_EBAdvection.H"
#include "ERF_EB.H"
#include "ERF_SurfaceLayer.H"
Include dependency graph for ERF_SlowRhsPre.cpp:

Functions

void erf_slow_rhs_pre (int level, int finest_level, int nrk, double dt, Vector< MultiFab > &S_rhs, Vector< MultiFab > &S_old, Vector< MultiFab > &S_data, const MultiFab &S_prim, const MultiFab &qt, MultiFab &avg_xmom, MultiFab &avg_ymom, MultiFab &avg_zmom, const MultiFab &xvel, const MultiFab &yvel, const MultiFab &zvel, std::unique_ptr< MultiFab > &z_t_mf, const MultiFab &cc_src, const MultiFab &xmom_src, const MultiFab &ymom_src, const MultiFab &zmom_src, const MultiFab &buoyancy, const MultiFab *zmom_crse_rhs, Vector< std::unique_ptr< MultiFab >> &Tau_lev, Vector< std::unique_ptr< MultiFab >> &Tau_corr_lev, Vector< Vector< std::unique_ptr< MultiFab >>> &Tau_EB, MultiFab *SmnSmn, MultiFab *eddyDiffs, MultiFab *Hfx1, MultiFab *Hfx2, MultiFab *Hfx3, MultiFab *Q1fx1, MultiFab *Q1fx2, MultiFab *Q1fx3, MultiFab *Q2fx3, MultiFab *Diss, MultiFab *Hfx3_EB, const Geometry geom, const SolverChoice &solverChoice, std::unique_ptr< SurfaceLayer > &SurfLayer, const Gpu::DeviceVector< BCRec > &domain_bcs_type_d, const Vector< BCRec > &domain_bcs_type_h, const MultiFab &z_phys_nd, const MultiFab &z_phys_cc, const MultiFab &ax, const MultiFab &ay, const MultiFab &az, const MultiFab &detJ, Gpu::DeviceVector< Real > &stretched_dz_d, Vector< MultiFab > &gradp, Vector< std::unique_ptr< MultiFab >> &mapfac, const eb_ &ebfact, ShocDriver *native_shoc_lev, YAFluxRegister *fr_as_crse, YAFluxRegister *fr_as_fine)
 

Function Documentation

◆ erf_slow_rhs_pre()

void erf_slow_rhs_pre ( int  level,
int  finest_level,
int  nrk,
double  dt,
Vector< MultiFab > &  S_rhs,
Vector< MultiFab > &  S_old,
Vector< MultiFab > &  S_data,
const MultiFab &  S_prim,
const MultiFab &  qt,
MultiFab &  avg_xmom,
MultiFab &  avg_ymom,
MultiFab &  avg_zmom,
const MultiFab &  xvel,
const MultiFab &  yvel,
const MultiFab &  zvel,
std::unique_ptr< MultiFab > &  z_t_mf,
const MultiFab &  cc_src,
const MultiFab &  xmom_src,
const MultiFab &  ymom_src,
const MultiFab &  zmom_src,
const MultiFab &  buoyancy,
const MultiFab *  zmom_crse_rhs,
Vector< std::unique_ptr< MultiFab >> &  Tau_lev,
Vector< std::unique_ptr< MultiFab >> &  Tau_corr_lev,
Vector< Vector< std::unique_ptr< MultiFab >>> &  Tau_EB,
MultiFab *  SmnSmn,
MultiFab *  eddyDiffs,
MultiFab *  Hfx1,
MultiFab *  Hfx2,
MultiFab *  Hfx3,
MultiFab *  Q1fx1,
MultiFab *  Q1fx2,
MultiFab *  Q1fx3,
MultiFab *  Q2fx3,
MultiFab *  Diss,
MultiFab *  Hfx3_EB,
const Geometry  geom,
const SolverChoice solverChoice,
std::unique_ptr< SurfaceLayer > &  SurfLayer,
const Gpu::DeviceVector< BCRec > &  domain_bcs_type_d,
const Vector< BCRec > &  domain_bcs_type_h,
const MultiFab &  z_phys_nd,
const MultiFab &  z_phys_cc,
const MultiFab &  ax,
const MultiFab &  ay,
const MultiFab &  az,
const MultiFab &  detJ,
Gpu::DeviceVector< Real > &  stretched_dz_d,
Vector< MultiFab > &  gradp,
Vector< std::unique_ptr< MultiFab >> &  mapfac,
const eb_ ebfact,
ShocDriver native_shoc_lev,
YAFluxRegister *  fr_as_crse,
YAFluxRegister *  fr_as_fine 
)

Function for computing the slow RHS for the evolution equations for the density, potential temperature and momentum.

Parameters
[in]levellevel of resolution
[in]finest_levelfinest level of resolution
[in]nrkwhich RK stage
[in]dtslow time step
[out]S_rhsRHS computed here
[in]S_oldold-time solution – used only for anelastic
[in]S_datacurrent solution
[in]S_primprimitive variables (i.e. conserved variables divided by density)
[in,out]avg_xmom
[in,out]avg_ymom
[in,out]avg_zmom
[in]xvelx-component of velocity
[in]yvely-component of velocity
[in]zvelz-component of velocity
[in]z_t_mf rate of change of grid height – only relevant for moving terrain
[in]cc_srcsource terms for conserved variables
[in]xmom_srcsource terms for x-momentum
[in]ymom_srcsource terms for y-momentum
[in]zmom_srcsource terms for z-momentum
[in]buoyancybuoyancy source term for z-momentum
[in]zmom_crse_rhsupdate term from coarser level for z-momentum; non-zero on c/f boundary only
[in]Tau_levcomponents of stress tensor
[in]SmnSmnstrain rate magnitude
[in]eddyDiffsdiffusion coefficients for LES turbulence models
[in]Hfx3heat flux in z-dir
[in]Dissdissipation of turbulent kinetic energy
[in]geomContainer for geometric information
[in]solverChoiceContainer for solver parameters
[in]SurfLayerPointer to SurfaceLayer class for Monin-Obukhov Similarity Theory boundary condition
[in]domain_bcs_type_ddevice vector for domain boundary conditions
[in]domain_bcs_type_hhost vector for domain boundary conditions
[in]z_phys_ndheight coordinate at nodes
[in]axarea fractions on x-faces
[in]ayarea fractions on y-faces
[in]azarea fractions on z-faces
[in]detJJacobian of the metric transformation (= 1 if use_terrain_fitted_coords is false)
[in]gradppressure gradient
[in]mapfacmap factors
[in]ebfactEB factories for cell- and face-centered variables
[in,out]fr_as_crseYAFluxRegister at level l at level l / l+1 interface
[in,out]fr_as_fineYAFluxRegister at level l at level l-1 / l interface
116 {
117  BL_PROFILE_REGION("erf_slow_rhs_pre()");
118 
119  const BCRec* bc_ptr_d = domain_bcs_type_d.data();
120  const BCRec* bc_ptr_h = domain_bcs_type_h.data();
121 
122  DiffChoice dc = solverChoice.diffChoice;
123  TurbChoice tc = solverChoice.turbChoice[level];
124 
125  const MultiFab* t_mean_mf = nullptr;
126  if (SurfLayer) { t_mean_mf = SurfLayer->get_mac_avg(level,2); }
127 
128  const Box& domain = geom.Domain();
129  int klo = domain.smallEnd(2);
130  int khi = domain.bigEnd(2);
131 
132  const AdvType l_horiz_adv_type = solverChoice.advChoice.dycore_horiz_adv_type;
133  const AdvType l_vert_adv_type = solverChoice.advChoice.dycore_vert_adv_type;
134  const Real l_horiz_upw_frac = solverChoice.advChoice.dycore_horiz_upw_frac;
135  const Real l_vert_upw_frac = solverChoice.advChoice.dycore_vert_upw_frac;
136  const bool l_use_stretched_dz = (solverChoice.mesh_type == MeshType::StretchedDz);
137  const bool l_use_terrain_fitted_coords = (solverChoice.mesh_type == MeshType::VariableDz);
138  const bool l_moving_terrain = (solverChoice.terrain_type == TerrainType::MovingFittedMesh);
139  if (l_moving_terrain) AMREX_ALWAYS_ASSERT (l_use_stretched_dz || l_use_terrain_fitted_coords);
140 
141  const bool l_use_diff = ( (dc.molec_diff_type != MolecDiffType::None) ||
142  (tc.les_type != LESType::None) ||
143  (tc.rans_type != RANSType::None) ||
144  (tc.pbl_type != PBLType::None) );
145  const bool l_use_turb = tc.use_kturb;
146  const bool l_need_SmnSmn = tc.use_keqn;
147 
148  const Real l_vert_implicit_fac = (solverChoice.implicit_thermal_diffusion) ?
149  solverChoice.vert_implicit_fac[level][nrk] : zero;
150 
151  const bool l_use_moisture = (solverChoice.moisture_type != MoistureType::None);
152  const bool l_use_SurfLayer = (SurfLayer != nullptr);
153  bool l_apply_surface_layer_fluxes_in_diffusion = l_use_SurfLayer;
154  const bool l_rotate = (solverChoice.use_rotate_surface_flux);
155 
156  const bool l_anelastic = (solverChoice.anelastic[level] == 1);
157  const bool l_fixed_rho = (solverChoice.fixed_density[level] == 1);
158 
159  const bool l_reflux = ( (solverChoice.coupling_type == CouplingType::TwoWay) && (finest_level > 0) &&
160  ( (l_anelastic && nrk == 1) || (!l_anelastic && nrk == 2) ) );
161 
162  const bool l_use_eb = (solverChoice.terrain_type == TerrainType::EB);
163 
164  const GpuArray<Real, AMREX_SPACEDIM> dxInv = geom.InvCellSizeArray();
165  const Real* dx = geom.CellSize();
166 
167  // *****************************************************************************
168  // Combine external forcing terms
169  // *****************************************************************************
170  const Array<Real,AMREX_SPACEDIM> grav{zero, zero, -solverChoice.gravity};
171  const GpuArray<Real,AMREX_SPACEDIM> grav_gpu{grav[0], grav[1], grav[2]};
172 
173  // **************************************************************************************
174  // If doing advection with EB we need the extra values for tangential interpolation
175  // **************************************************************************************
176  if (l_use_eb) {
177  S_data[IntVars::xmom].FillBoundary(geom.periodicity());
178  S_data[IntVars::ymom].FillBoundary(geom.periodicity());
179  S_data[IntVars::zmom].FillBoundary(geom.periodicity());
180  }
181 
182  // *****************************************************************************
183  // Pre-computed quantities
184  // *****************************************************************************
185  int nvars = S_data[IntVars::cons].nComp();
186  const BoxArray& ba = S_data[IntVars::cons].boxArray();
187  const DistributionMapping& dm = S_data[IntVars::cons].DistributionMap();
188 
189  int nGhost = (l_use_eb) ? 2 : 1;
190  MultiFab Omega(convert(ba,IntVect(0,0,1)), dm, 1, nGhost);
191 
192  std::unique_ptr<MultiFab> expr;
193  std::unique_ptr<MultiFab> dflux_x;
194  std::unique_ptr<MultiFab> dflux_y;
195  std::unique_ptr<MultiFab> dflux_z;
196 
197  if (l_use_diff) {
198 #ifdef ERF_USE_EAMXX_SHOC
199  if (tc.uses_eamxx_shoc()) {
200  AMREX_ALWAYS_ASSERT(eamxx_shoc_lev != nullptr);
201  // SHOC either supplies host-applied vertical SGS coefficients or
202  // clears them so the host does not re-apply SHOC transport.
203  eamxx_shoc_lev->set_eddy_diffs();
204  }
205 #endif
206  if (tc.uses_native_shoc()) {
207  AMREX_ALWAYS_ASSERT(native_shoc_lev != nullptr);
208  // Native SHOC always owns the scalar fluxes in state_update mode.
209  // When it also owns momentum stresses, we skip the generic
210  // SurfaceLayer call entirely so the host does not re-apply them.
211  native_shoc_lev->set_eddy_diffs();
212  }
213 
214  erf_make_tau_terms(level,nrk,domain_bcs_type_h,z_phys_nd,
215  S_data,xvel,yvel,zvel,
216  Tau_lev,Tau_corr_lev,
217  SmnSmn,eddyDiffs,geom,solverChoice,SurfLayer,
218  stretched_dz_d, detJ,mapfac, ax, ay, az, ebfact);
219 
220  IntVect ng(0,0,1);
221  dflux_x = std::make_unique<MultiFab>(convert(ba,IntVect(1,0,0)), dm, nvars, ng);
222  dflux_y = std::make_unique<MultiFab>(convert(ba,IntVect(0,1,0)), dm, nvars, ng);
223  dflux_z = std::make_unique<MultiFab>(convert(ba,IntVect(0,0,1)), dm, nvars, 0);
224 
225  bool surface_layer_handled = false;
226 #ifdef ERF_USE_EAMXX_SHOC
227  if (tc.uses_eamxx_shoc()) {
228  AMREX_ALWAYS_ASSERT(eamxx_shoc_lev != nullptr);
229  // EAMxx SHOC owns the overlapping lower-boundary fluxes here, so
230  // do not fall through to the generic SurfaceLayer path.
231  eamxx_shoc_lev->set_diff_stresses();
232  surface_layer_handled = true;
233  }
234 #endif
235  if (tc.uses_native_shoc()) {
236  AMREX_ALWAYS_ASSERT(native_shoc_lev != nullptr);
237  if (native_shoc_lev->owns_scalar_surface_fluxes()) {
238  l_apply_surface_layer_fluxes_in_diffusion = false;
239  }
240  if (!native_shoc_lev->needs_host_surface_momentum_stresses()) {
241  surface_layer_handled = true;
242  }
243  }
244  if (!surface_layer_handled && l_use_SurfLayer) {
245  Vector<const MultiFab*> mfs = {&S_data[IntVars::cons], &xvel, &yvel, &zvel};
246  if (!l_use_eb) {
247  SurfLayer->impose_SurfaceLayer_bcs(level, mfs, Tau_lev,
248  Hfx1, Hfx2, Hfx3,
249  Q1fx1, Q1fx2, Q1fx3,
250  &z_phys_nd);
251 
252  //if (l_vert_implicit_fac > 0 && solverChoice.implicit_momentum_diffusion) {
253  // copy_surface_tau_for_implicit(Tau_lev, Tau_corr_lev);
254  //}
255  } else {
256  SurfLayer->impose_SurfaceLayer_bcs_EB(level, mfs, Tau_EB,
257  Hfx1, Hfx2, Hfx3_EB,
258  Q1fx1, Q1fx2, Q1fx3);
259  }
260  }
261  if (tc.uses_native_shoc() && native_shoc_lev && native_shoc_lev->owns_scalar_surface_fluxes()) {
262  // SHOC-owned scalar fluxes must not be reused by the host
263  // diffusion source, even if the host SurfaceLayer path was also
264  // evaluated for momentum stress ownership.
265  native_shoc_lev->set_diff_stresses();
266  }
267  } // l_use_diff
268 
269  // This is just cautionary to deal with grid boundaries that aren't domain boundaries
270  S_rhs[IntVars::zmom].setVal(0);
271 
272  // *****************************************************************************
273  // Define updates and fluxes in the current RK stage
274  // *****************************************************************************
275  // Cell-centered masks for EB (used for flux interpolation)
276  bool already_on_centroids = false;
277  Vector<iMultiFab> physbnd_mask;
278  physbnd_mask.resize(IntVars::NumTypes);
279  if (l_use_eb) {
280  physbnd_mask[IntVars::cons].define(S_data[IntVars::cons].boxArray(), S_data[IntVars::cons].DistributionMap(), 1, 1);
281  physbnd_mask[IntVars::cons].BuildMask(geom.Domain(), geom.periodicity(), 1, 1, 0, 1);
282  // physbnd_mask[IntVars::cons].FillBoundary(geom.periodicity());
283  for (int dir = 0; dir < AMREX_SPACEDIM; ++dir) {
284  physbnd_mask[1+dir].define(S_data[1+dir].boxArray(), S_data[1+dir].DistributionMap(), 1, 1);
285  physbnd_mask[1+dir].BuildMask(geom.Domain(), geom.periodicity(), 1, 1, 0, 1);
286  // physbnd_mask[1+dir].FillBoundary(geom.periodicity());
287  }
288  }
289 
290 #ifdef _OPENMP
291 #pragma omp parallel if (Gpu::notInLaunchRegion())
292 #endif
293  {
294  BL_PROFILE("slow_rhs_making_omega");
295  for ( MFIter mfi(S_data[IntVars::cons],TileNoZ()); mfi.isValid(); ++mfi)
296  {
297  Box bx = mfi.tilebox();
298 
299  IntVect nGrowVect = (l_use_eb)
300  ? IntVect(AMREX_D_DECL(2, 2, 2)) : IntVect(AMREX_D_DECL(1, 1, 1));
301  Box gbxo = surroundingNodes(bx,2); gbxo.grow(nGrowVect);
302 
303  const Array4<const Real>& rho_u = S_data[IntVars::xmom].array(mfi);
304  const Array4<const Real>& rho_v = S_data[IntVars::ymom].array(mfi);
305  const Array4<const Real>& rho_w = S_data[IntVars::zmom].array(mfi);
306  const Array4< Real>& omega_arr = Omega.array(mfi);
307 
308  //
309  // Now create Omega with momentum (not velocity) with z_t subtracted if moving terrain
310  // ONLY if not doing anelastic + terrain -- in that case Omega will be defined coming
311  // out of the projection
312  //
313  if (!l_use_terrain_fitted_coords) {
314  ParallelFor(gbxo, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
315  omega_arr(i,j,k) = rho_w(i,j,k);
316  });
317 
318  } else {
319 
320  Box gbxo_lo = gbxo; gbxo_lo.setBig(2,domain.smallEnd(2));
321  int lo_z_face = domain.smallEnd(2);
322  if (gbxo_lo.smallEnd(2) <= lo_z_face) {
323  ParallelFor(gbxo_lo, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
324  omega_arr(i,j,k) = zero;
325  });
326  }
327  Box gbxo_hi = gbxo; gbxo_hi.setSmall(2,gbxo.bigEnd(2));
328  int hi_z_face = domain.bigEnd(2)+1;
329  if (gbxo_hi.bigEnd(2) >= hi_z_face) {
330  ParallelFor(gbxo_hi, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
331  omega_arr(i,j,k) = rho_w(i,j,k);
332  });
333  }
334 
335  const Array4<const Real>& z_nd = z_phys_nd.const_array(mfi);
336  const Array4<const Real>& mf_ux = mapfac[MapFacType::u_x]->const_array(mfi);
337  const Array4<const Real>& mf_vy = mapfac[MapFacType::v_y]->const_array(mfi);
338 
339  if (z_t_mf) { // Note we never do anelastic with moving terrain
340  Box gbxo_mid = gbxo; gbxo_mid.setSmall(2,1); gbxo_mid.setBig(2,gbxo.bigEnd(2)-1);
341  Array4<const Real> z_t = z_t_mf->array(mfi);
342  const Array4<const Real>& cell_data = S_data[IntVars::cons].array(mfi);
343  ParallelFor(gbxo_mid, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
344  // We define rho on the z-face the same way as in MomentumToVelocity/VelocityToMomentum
345  Real rho_at_face = myhalf * (cell_data(i,j,k,Rho_comp) + cell_data(i,j,k-1,Rho_comp));
346  omega_arr(i,j,k) = OmegaFromW(i,j,k,rho_w(i,j,k),
347  rho_u,rho_v,mf_ux,mf_vy,z_nd,dxInv) -
348  rho_at_face * z_t(i,j,k);
349  });
350  } else {
351  Box gbxo_mid = gbxo;
352  if (gbxo_mid.smallEnd(2) <= domain.smallEnd(2)) {
353  gbxo_mid.setSmall(2,1);
354  }
355  if (gbxo_mid.bigEnd(2) >= domain.bigEnd(2)+1) {
356  gbxo_mid.setBig(2,gbxo.bigEnd(2)-1);
357  }
358  ParallelFor(gbxo_mid, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
359  omega_arr(i,j,k) = OmegaFromW(i,j,k,rho_w(i,j,k),
360  rho_u,rho_v,mf_ux,mf_vy,z_nd,dxInv);
361  });
362  }
363  }
364  } // mfi
365  } // OMP
366 
367  // We need extra values of Omega in the vertical if grids are decomposed vertically
368  Omega.FillBoundary(geom.periodicity());
369 
370 #ifdef _OPENMP
371 #pragma omp parallel if (Gpu::notInLaunchRegion())
372 #endif
373  {
374  for ( MFIter mfi(S_data[IntVars::cons],TileNoZ()); mfi.isValid(); ++mfi)
375  {
376  Box bx = mfi.tilebox();
377  Box tbx = mfi.nodaltilebox(0);
378  Box tby = mfi.nodaltilebox(1);
379  Box tbz = mfi.nodaltilebox(2);
380 
381  // Boxes for momentum fluxes
382  Vector<Box> tbx_grown(AMREX_SPACEDIM);
383  Vector<Box> tby_grown(AMREX_SPACEDIM);
384  Vector<Box> tbz_grown(AMREX_SPACEDIM);
385  if (l_use_eb) {
386  for (int dir = 0; dir < AMREX_SPACEDIM; ++dir) {
387  tbx_grown[dir] = tbx;
388  tby_grown[dir] = tby;
389  tbz_grown[dir] = tbz;
390  IntVect iv(1, 1, 1);
391  iv[dir] = 0;
392  tbx_grown[dir] = (tbx_grown[dir].growHi(dir,1)).grow(iv);
393  tby_grown[dir] = (tby_grown[dir].growHi(dir,1)).grow(iv);
394  tbz_grown[dir] = (tbz_grown[dir].growHi(dir,1)).grow(iv);
395  }
396  }
397 
398  // We don't compute a source term for z-momentum on the bottom or top domain boundary
399  if (tbz.smallEnd(2) == domain.smallEnd(2)) {
400  tbz.growLo(2,-1);
401  }
402  if (tbz.bigEnd(2) == domain.bigEnd(2)+1) {
403  tbz.growHi(2,-1);
404  }
405 
406  const Array4<const Real> & cell_data = S_data[IntVars::cons].array(mfi);
407  const Array4<const Real> & cell_prim = S_prim.array(mfi);
408  const Array4<Real> & cell_rhs = S_rhs[IntVars::cons].array(mfi);
409 
410  const Array4<const Real> & cell_old = S_old[IntVars::cons].array(mfi);
411 
412  const Array4<Real const>& xmom_src_arr = xmom_src.const_array(mfi);
413  const Array4<Real const>& ymom_src_arr = ymom_src.const_array(mfi);
414  const Array4<Real const>& zmom_src_arr = zmom_src.const_array(mfi);
415  const Array4<Real const>& buoyancy_arr = buoyancy.const_array(mfi);
416 
417  const Array4<Real const>& gpx_arr = gradp[GpVars::gpx].const_array(mfi);
418  const Array4<Real const>& gpy_arr = gradp[GpVars::gpy].const_array(mfi);
419  const Array4<Real const>& gpz_arr = gradp[GpVars::gpz].const_array(mfi);
420 
421  const Array4<Real const>& qt_arr = qt.const_array(mfi);
422 
423  const Array4<Real>& rho_u_old = S_old[IntVars::xmom].array(mfi);
424  const Array4<Real>& rho_v_old = S_old[IntVars::ymom].array(mfi);
425 
426  if (l_anelastic) {
427  // When anelastic we must reset these to 0 each RK step
428  avg_xmom[mfi].template setVal<RunOn::Device>(0,tbx);
429  avg_ymom[mfi].template setVal<RunOn::Device>(0,tby);
430  avg_zmom[mfi].template setVal<RunOn::Device>(0,tbz);
431  }
432 
433  Array4<Real> avg_xmom_arr = avg_xmom.array(mfi);
434  Array4<Real> avg_ymom_arr = avg_ymom.array(mfi);
435  Array4<Real> avg_zmom_arr = avg_zmom.array(mfi);
436 
437  const Array4<const Real> & u = xvel.array(mfi);
438  const Array4<const Real> & v = yvel.array(mfi);
439  const Array4<const Real> & w = zvel.array(mfi);
440 
441  const Array4<const Real>& rho_u = S_data[IntVars::xmom].array(mfi);
442  const Array4<const Real>& rho_v = S_data[IntVars::ymom].array(mfi);
443 
444  // Map factors
445  const Array4<const Real>& mf_mx = mapfac[MapFacType::m_x]->const_array(mfi);
446  const Array4<const Real>& mf_ux = mapfac[MapFacType::u_x]->const_array(mfi);
447  const Array4<const Real>& mf_vx = mapfac[MapFacType::v_x]->const_array(mfi);
448  const Array4<const Real>& mf_my = mapfac[MapFacType::m_y]->const_array(mfi);
449  const Array4<const Real>& mf_uy = mapfac[MapFacType::u_y]->const_array(mfi);
450  const Array4<const Real>& mf_vy = mapfac[MapFacType::v_y]->const_array(mfi);
451 
452  const Array4< Real>& omega_arr = Omega.array(mfi);
453 
454  Array4<const Real> z_t;
455  if (z_t_mf) {
456  z_t = z_t_mf->array(mfi);
457  } else {
458  z_t = Array4<const Real>{};
459  }
460 
461  const Array4<Real>& rho_u_rhs = S_rhs[IntVars::xmom].array(mfi);
462  const Array4<Real>& rho_v_rhs = S_rhs[IntVars::ymom].array(mfi);
463  const Array4<Real>& rho_w_rhs = S_rhs[IntVars::zmom].array(mfi);
464 
465  const Array4<Real const>& mu_turb = l_use_turb ? eddyDiffs->const_array(mfi) : Array4<const Real>{};
466 
467  // Terrain metrics
468  const Array4<const Real>& z_nd = z_phys_nd.const_array(mfi);
469  const Array4<const Real>& z_cc = z_phys_cc.const_array(mfi);
470 
471  // *****************************************************************************
472  // Define flux arrays for use in advection
473  // *****************************************************************************
474  std::array<FArrayBox,AMREX_SPACEDIM> flux;
475  std::array<FArrayBox,AMREX_SPACEDIM> flux_u;
476  std::array<FArrayBox,AMREX_SPACEDIM> flux_v;
477  std::array<FArrayBox,AMREX_SPACEDIM> flux_w;
478 
479  for (int dir = 0; dir < AMREX_SPACEDIM; ++dir) {
480  if (!l_use_eb) {
481  flux[dir].resize(surroundingNodes(bx,dir),2,The_Async_Arena());
482  } else {
483  flux[dir].resize(surroundingNodes(bx,dir).grow(1),2,The_Async_Arena());
484  }
485  flux[dir].setVal<RunOn::Device>(0);
486  }
487  const GpuArray<const Array4<Real>, AMREX_SPACEDIM>
488  flx_arr{{AMREX_D_DECL(flux[0].array(), flux[1].array(), flux[2].array())}};
489 
490  // Define flux arrays for momentum variables (used only for EB now)
491  GpuArray<Array4<Real>, AMREX_SPACEDIM> flx_u_arr{};
492  GpuArray<Array4<Real>, AMREX_SPACEDIM> flx_v_arr{};
493  GpuArray<Array4<Real>, AMREX_SPACEDIM> flx_w_arr{};
494 
495  if (l_use_eb) {
496  for (int dir = 0; dir < AMREX_SPACEDIM; ++dir) {
497  flux_u[dir].resize(tbx_grown[dir],1,The_Async_Arena());
498  flux_v[dir].resize(tby_grown[dir],1,The_Async_Arena());
499  flux_w[dir].resize(tbz_grown[dir],1,The_Async_Arena());
500  flux_u[dir].setVal<RunOn::Device>(0);
501  flux_v[dir].setVal<RunOn::Device>(0);
502  flux_w[dir].setVal<RunOn::Device>(0);
503  flx_u_arr[dir] = flux_u[dir].array();
504  flx_v_arr[dir] = flux_v[dir].array();
505  flx_w_arr[dir] = flux_w[dir].array();
506  }
507  }
508 
509  // *****************************************************************************
510  // Diffusive terms (pre-computed above)
511  // *****************************************************************************
512  // No terrain diffusion
513  Array4<Real> tau11,tau22,tau33;
514  Array4<Real> tau12,tau13,tau23;
515  if (Tau_lev[TauType::tau11]) {
516  tau11 = Tau_lev[TauType::tau11]->array(mfi); tau22 = Tau_lev[TauType::tau22]->array(mfi);
517  tau33 = Tau_lev[TauType::tau33]->array(mfi); tau12 = Tau_lev[TauType::tau12]->array(mfi);
518  tau13 = Tau_lev[TauType::tau13]->array(mfi); tau23 = Tau_lev[TauType::tau23]->array(mfi);
519  } else {
520  tau11 = Array4<Real>{}; tau22 = Array4<Real>{}; tau33 = Array4<Real>{};
521  tau12 = Array4<Real>{}; tau13 = Array4<Real>{}; tau23 = Array4<Real>{};
522  }
523  // Terrain diffusion
524  Array4<Real> tau21,tau31,tau32;
525  if (Tau_lev[TauType::tau21]) {
526  tau21 = Tau_lev[TauType::tau21]->array(mfi);
527  tau31 = Tau_lev[TauType::tau31]->array(mfi);
528  tau32 = Tau_lev[TauType::tau32]->array(mfi);
529  } else {
530  tau21 = Array4<Real>{}; tau31 = Array4<Real>{}; tau32 = Array4<Real>{};
531  }
532 
533  // EB surface layer fluxes
534  Array4<Real> u_tau_eb13, u_tau_eb23;
535  Array4<Real> v_tau_eb13, v_tau_eb23;
536  Array4<Real> w_tau_eb13, w_tau_eb23;
537  if (l_use_eb) {
538  EBChoice ebChoice = solverChoice.ebChoice;
540  u_tau_eb13 = Tau_EB[EBTauType::tau_eb13][EBGridType::xface]->array(mfi);
541  u_tau_eb23 = Tau_EB[EBTauType::tau_eb23][EBGridType::xface]->array(mfi);
542  v_tau_eb13 = Tau_EB[EBTauType::tau_eb13][EBGridType::yface]->array(mfi);
543  v_tau_eb23 = Tau_EB[EBTauType::tau_eb23][EBGridType::yface]->array(mfi);
544  w_tau_eb13 = Tau_EB[EBTauType::tau_eb13][EBGridType::zface]->array(mfi);
545  w_tau_eb23 = Tau_EB[EBTauType::tau_eb23][EBGridType::zface]->array(mfi);
546  }
547  }
548 
549  // Strain magnitude
550  Array4<Real> SmnSmn_a;
551  if (l_need_SmnSmn) {
552  SmnSmn_a = SmnSmn->array(mfi);
553  } else {
554  SmnSmn_a = Array4<Real>{};
555  }
556 
557  // *****************************************************************************
558  // Define updates in the RHS of continuity and potential temperature equations
559  // *****************************************************************************
560  bool l_eb_terrain_cc = false; // EB terrain on cell-centered grid
561  Array4<const int> mask_arr{};
562  Array4<const EBCellFlag> cfg_arr{};
563  Array4<const Real> ax_arr{};
564  Array4<const Real> ay_arr{};
565  Array4<const Real> az_arr{};
566  Array4<const Real> fcx_arr{};
567  Array4<const Real> fcy_arr{};
568  Array4<const Real> fcz_arr{};
569  Array4<const Real> detJ_arr{};
570  Array4<const Real> barea_arr{};
571  Array4<const Real> bcent_arr{};
572 
573  if (l_use_eb)
574  {
575  EBCellFlagFab const& cfg = (ebfact.get_const_factory())->getMultiEBCellFlagFab()[mfi];
576  cfg_arr = cfg.const_array();
577  if (cfg.getType(bx) == FabType::singlevalued) {
578  l_eb_terrain_cc = true;
579  ax_arr = (ebfact.get_const_factory())->getAreaFrac()[0]->const_array(mfi);
580  ay_arr = (ebfact.get_const_factory())->getAreaFrac()[1]->const_array(mfi);
581  az_arr = (ebfact.get_const_factory())->getAreaFrac()[2]->const_array(mfi);
582  fcx_arr = (ebfact.get_const_factory())->getFaceCent()[0]->const_array(mfi);
583  fcy_arr = (ebfact.get_const_factory())->getFaceCent()[1]->const_array(mfi);
584  fcz_arr = (ebfact.get_const_factory())->getFaceCent()[2]->const_array(mfi);
585  detJ_arr = (ebfact.get_const_factory())->getVolFrac().const_array(mfi);
586  mask_arr = physbnd_mask[IntVars::cons].const_array(mfi);
587  barea_arr = (ebfact.get_const_factory())->getBndryArea().const_array(mfi);
588  bcent_arr = (ebfact.get_const_factory())->getBndryCent().const_array(mfi);
589  } else {
590  ax_arr = ax.const_array(mfi);
591  ay_arr = ay.const_array(mfi);
592  az_arr = az.const_array(mfi);
593  detJ_arr = detJ.const_array(mfi);
594  }
595  } else {
596  ax_arr = ax.const_array(mfi);
597  ay_arr = ay.const_array(mfi);
598  az_arr = az.const_array(mfi);
599  detJ_arr = detJ.const_array(mfi);
600  }
601 
602  int icomp = RhoTheta_comp; int ncomp = 1;
603  if (!l_eb_terrain_cc){
604  AdvectionSrcForRho( bx, cell_rhs,
605  rho_u, rho_v, omega_arr, // these are being used to build the fluxes
606  avg_xmom_arr, avg_ymom_arr, avg_zmom_arr, // these are being defined from the fluxes
607  ax_arr, ay_arr, az_arr, detJ_arr,
608  dxInv, mf_mx, mf_my, mf_uy, mf_vx,
609  flx_arr, l_fixed_rho);
610  AdvectionSrcForScalars(bx, icomp, ncomp,
611  avg_xmom_arr, avg_ymom_arr, avg_zmom_arr,
612  cell_prim, cell_rhs,
613  detJ_arr, dxInv, mf_mx, mf_my,
614  l_horiz_adv_type, l_vert_adv_type,
615  l_horiz_upw_frac, l_vert_upw_frac,
616  flx_arr, domain, bc_ptr_h);
617  } else {
618  EBAdvectionSrcForRho(bx, cell_rhs,
619  rho_u, rho_v, omega_arr,
620  avg_xmom_arr, avg_ymom_arr, avg_zmom_arr,
621  mask_arr, cfg_arr,
622  ax_arr, ay_arr, az_arr,
623  fcx_arr, fcy_arr, fcz_arr, detJ_arr,
624  dxInv, mf_mx, mf_my, mf_uy, mf_vx,
625  flx_arr, l_fixed_rho,
626  already_on_centroids);
627  EBAdvectionSrcForScalars(bx, icomp, ncomp,
628  avg_xmom_arr, avg_ymom_arr, avg_zmom_arr,
629  cell_prim, cell_rhs,
630  mask_arr, cfg_arr, ax_arr, ay_arr, az_arr,
631  fcx_arr, fcy_arr, fcz_arr,
632  detJ_arr, dxInv, mf_mx, mf_my,
633  l_horiz_adv_type, l_vert_adv_type,
634  l_horiz_upw_frac, l_vert_upw_frac,
635  flx_arr, domain, bc_ptr_h,
636  already_on_centroids);
637  }
638 
639  if (l_use_diff) {
640  Array4<Real> diffflux_x = dflux_x->array(mfi);
641  Array4<Real> diffflux_y = dflux_y->array(mfi);
642  Array4<Real> diffflux_z = dflux_z->array(mfi);
643 
644  Array4<Real> hfx_x = Hfx1->array(mfi);
645  Array4<Real> hfx_y = Hfx2->array(mfi);
646  Array4<Real> hfx_z = Hfx3->array(mfi);
647  Array4<Real> hfx_EB{};
648  if (l_use_eb) {
649  hfx_EB = Hfx3_EB->array(mfi);
650  }
651 
652  Array4<Real> q1fx_x = (Q1fx1) ? Q1fx1->array(mfi) : Array4<Real>{};
653  Array4<Real> q1fx_y = (Q1fx2) ? Q1fx2->array(mfi) : Array4<Real>{};
654  Array4<Real> q1fx_z = (Q1fx3) ? Q1fx3->array(mfi) : Array4<Real>{};
655 
656  Array4<Real> q2fx_z = (Q2fx3) ? Q2fx3->array(mfi) : Array4<Real>{};
657  Array4<Real> diss = Diss->array(mfi);
658 
659  const Array4<const Real> tm_arr = t_mean_mf ? t_mean_mf->const_array(mfi) : Array4<const Real>{};
660 
661  // NOTE: No diffusion for continuity, so n starts at one
662  int n_start = RhoTheta_comp;
663  int n_comp = 1;
664 
665  // For l_vert_implicit_fac > 0, we scale the rho*theta contribution
666  // by (1 - implicit_fac) and add in the implicit contribution with
667  // ERF_Implicit.H
668  if (l_use_stretched_dz) {
669  DiffusionSrcForState_S(bx, domain, n_start, n_comp, u, v,
670  cell_data, cell_prim, cell_rhs,
671  diffflux_x, diffflux_y, diffflux_z,
672  stretched_dz_d, dxInv, SmnSmn_a,
673  mf_mx, mf_ux, mf_vx,
674  mf_my, mf_uy, mf_vy,
675  hfx_z, q1fx_z, q2fx_z, diss,
676  mu_turb, solverChoice, level,
677  tm_arr, grav_gpu, bc_ptr_d, l_apply_surface_layer_fluxes_in_diffusion, l_vert_implicit_fac);
678  } else if (l_use_terrain_fitted_coords) {
679  DiffusionSrcForState_T(bx, domain, n_start, n_comp, l_rotate, u, v,
680  cell_data, cell_prim, cell_rhs,
681  diffflux_x, diffflux_y, diffflux_z,
682  z_nd, z_cc, ax_arr, ay_arr, az_arr, detJ_arr,
683  dxInv, SmnSmn_a,
684  mf_mx, mf_ux, mf_vx,
685  mf_my, mf_uy, mf_vy,
686  hfx_x, hfx_y, hfx_z, q1fx_x, q1fx_y, q1fx_z, q2fx_z, diss,
687  mu_turb, solverChoice, level,
688  tm_arr, grav_gpu, bc_ptr_d, l_apply_surface_layer_fluxes_in_diffusion, l_vert_implicit_fac);
689  } else if (l_use_eb) {
690  DiffusionSrcForState_EB(bx, domain, n_start, n_comp, u, v,
691  cell_data, cell_prim, cell_rhs,
692  diffflux_x, diffflux_y, diffflux_z,
693  cfg_arr, ax_arr, ay_arr, az_arr, detJ_arr,
694  barea_arr, bcent_arr,
695  dx, dxInv,
696  hfx_z, q1fx_z, q2fx_z, hfx_EB,
697  mu_turb, solverChoice, level,
698  bc_ptr_d, l_apply_surface_layer_fluxes_in_diffusion);
699  } else {
700  DiffusionSrcForState_N(bx, domain, n_start, n_comp, u, v,
701  cell_data, cell_prim, cell_rhs,
702  diffflux_x, diffflux_y, diffflux_z,
703  dxInv, SmnSmn_a,
704  mf_mx, mf_ux, mf_vx,
705  mf_my, mf_uy, mf_vy,
706  hfx_z, q1fx_z, q2fx_z, diss,
707  mu_turb, solverChoice, level,
708  tm_arr, grav_gpu, bc_ptr_d, l_apply_surface_layer_fluxes_in_diffusion, l_vert_implicit_fac);
709  }
710  }
711 
712  const Array4<Real const>& source_arr = cc_src.const_array(mfi);
713  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
714  {
715  cell_rhs(i,j,k,Rho_comp) += source_arr(i,j,k,Rho_comp);
716  cell_rhs(i,j,k,RhoTheta_comp) += source_arr(i,j,k,RhoTheta_comp);
717  });
718 
719  Real half_dt = static_cast<Real>(myhalf/dt);
720 
721  // If anelastic and in second RK stage, take average of old-time and new-time source
722  if ( l_anelastic && (nrk == 1) )
723  {
724  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
725  {
726  cell_rhs(i,j,k, Rho_comp) *= myhalf;
727  cell_rhs(i,j,k,RhoTheta_comp) *= myhalf;
728 
729  cell_rhs(i,j,k, Rho_comp) += half_dt * (cell_data(i,j,k, Rho_comp) - cell_old(i,j,k, Rho_comp));
730  cell_rhs(i,j,k,RhoTheta_comp) += half_dt * (cell_data(i,j,k,RhoTheta_comp) - cell_old(i,j,k,RhoTheta_comp));
731  });
732  }
733 
734  // *****************************************************************************
735  // Define updates in the RHS of {x, y, z}-momentum equations
736  // *****************************************************************************
737  int lo_z_face = domain.smallEnd(2);
738  int hi_z_face = domain.bigEnd(2)+1;
739 
740  AdvectionSrcForMom(mfi, bx, tbx, tby, tbz, tbx_grown, tby_grown, tbz_grown,
741  rho_u_rhs, rho_v_rhs, rho_w_rhs,
742  cell_data, u, v, w,
743  rho_u, rho_v, omega_arr,
744  z_nd, ax_arr, ay_arr, az_arr,
745  detJ_arr, stretched_dz_d,
746  dxInv, mf_mx, mf_ux, mf_vx, mf_my, mf_uy, mf_vy,
747  l_horiz_adv_type, l_vert_adv_type,
748  l_horiz_upw_frac, l_vert_upw_frac,
749  solverChoice.mesh_type, solverChoice.terrain_type,
750  ebfact, flx_u_arr, flx_v_arr, flx_w_arr,
751  physbnd_mask, already_on_centroids,
752  lo_z_face, hi_z_face, domain, bc_ptr_h);
753 
754  if (l_use_diff) {
755  // Note: tau** were calculated with calls to
756  // ComputeStress[Cons|Var]Visc_[N|S|T] in which ConsVisc ("constant
757  // viscosity") means that there is no contribution from a
758  // turbulence model. However, whether this field truly is constant
759  // depends on whether MolecDiffType is Constant or ConstantAlpha.
760  if (!l_use_eb) {
761  DiffusionSrcForMom(tbx, tby, tbz,
762  rho_u_rhs, rho_v_rhs, rho_w_rhs,
763  tau11, tau22, tau33,
765  detJ_arr, stretched_dz_d, dxInv,
766  mf_mx, mf_ux, mf_vx,
767  mf_my, mf_uy, mf_vy,
768  l_use_stretched_dz,
769  l_use_terrain_fitted_coords);
770  } else {
771  DiffusionSrcForMom_EB(mfi, domain, tbx, tby, tbz,
772  rho_u_rhs, rho_v_rhs, rho_w_rhs,
773  u, v, w,
774  tau11, tau22, tau33,
775  tau12, tau13, tau23,
776  u_tau_eb13, u_tau_eb23, v_tau_eb13, v_tau_eb23, w_tau_eb13, w_tau_eb23,
777  dx, dxInv,
778  mf_mx, mf_ux, mf_vx,
779  mf_my, mf_uy, mf_vy,
780  solverChoice, ebfact, bc_ptr_d);
781  }
782  }
783 
784  auto abl_pressure_grad = solverChoice.abl_pressure_grad;
785 
786  ParallelFor(tbx, tby,
787  [=] AMREX_GPU_DEVICE (int i, int j, int k)
788  { // x-momentum equation
789 
790  // Note that gradp arrays now carry the map factor in them
791 
792  Real q = (l_use_moisture) ? myhalf * (qt_arr(i,j,k) + qt_arr(i-1,j,k)) : zero;
793 
794  rho_u_rhs(i, j, k) += (-gpx_arr(i,j,k) - abl_pressure_grad[0]) / (one + q) + xmom_src_arr(i,j,k);
795 
796  if (l_moving_terrain) {
797  Real h_zeta = Compute_h_zeta_AtIface(i, j, k, dxInv, z_nd);
798  rho_u_rhs(i, j, k) *= h_zeta;
799  }
800 
801  if ( l_anelastic && (nrk == 1) ) {
802  rho_u_rhs(i,j,k) *= myhalf;
803  rho_u_rhs(i,j,k) += half_dt * (rho_u(i,j,k) - rho_u_old(i,j,k));
804  }
805  },
806  [=] AMREX_GPU_DEVICE (int i, int j, int k)
807  { // y-momentum equation
808 
809  // Note that gradp arrays now carry the map factor in them
810 
811  Real q = (l_use_moisture) ? myhalf * (qt_arr(i,j,k) + qt_arr(i,j-1,k)) : zero;
812 
813  rho_v_rhs(i, j, k) += (-gpy_arr(i,j,k) - abl_pressure_grad[1]) / (one + q) + ymom_src_arr(i,j,k);
814 
815  if (l_moving_terrain) {
816  Real h_zeta = Compute_h_zeta_AtJface(i, j, k, dxInv, z_nd);
817  rho_v_rhs(i, j, k) *= h_zeta;
818  }
819 
820  if ( l_anelastic && (nrk == 1) ) {
821  rho_v_rhs(i,j,k) *= myhalf;
822  rho_v_rhs(i,j,k) += half_dt * (rho_v(i,j,k) - rho_v_old(i,j,k));
823  }
824  });
825 
826  // *****************************************************************************
827  // Zero out source terms for x- and y- momenta if at walls or inflow
828  // We need to do this -- even though we call the boundary conditions later --
829  // because the slow source is used to update the state in the fast interpolater.
830  // *****************************************************************************
831  if (bx.smallEnd(0) == domain.smallEnd(0)) {
832  Box lo_x_dom_face(bx); lo_x_dom_face.setBig(0,bx.smallEnd(0));
833  if (bc_ptr_h[BCVars::xvel_bc].lo(0) == ERFBCType::ext_dir) {
834  ParallelFor(lo_x_dom_face, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
835  rho_u_rhs(i,j,k) = zero;
836  });
837  } else if (bc_ptr_h[BCVars::xvel_bc].lo(0) == ERFBCType::ext_dir_upwind) {
838  ParallelFor(lo_x_dom_face, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
839  if (u(i,j,k) >= zero) {
840  rho_u_rhs(i,j,k) = zero;
841  }
842  });
843  }
844  }
845  if (bx.bigEnd(0) == domain.bigEnd(0)) {
846  Box hi_x_dom_face(bx); hi_x_dom_face.setSmall(0,bx.bigEnd(0)+1); hi_x_dom_face.setBig(0,bx.bigEnd(0)+1);
847  if (bc_ptr_h[BCVars::xvel_bc].hi(0) == ERFBCType::ext_dir) {
848  ParallelFor(hi_x_dom_face, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
849  rho_u_rhs(i,j,k) = zero;
850  });
851  } else if (bc_ptr_h[BCVars::xvel_bc].hi(0) == ERFBCType::ext_dir_upwind) {
852  ParallelFor(hi_x_dom_face, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
853  if (u(i,j,k) <= zero) {
854  rho_u_rhs(i,j,k) = zero;
855  }
856  });
857  }
858  }
859  if (bx.smallEnd(1) == domain.smallEnd(1)) {
860  Box lo_y_dom_face(bx); lo_y_dom_face.setBig(1,bx.smallEnd(1));
861  if (bc_ptr_h[BCVars::yvel_bc].lo(1) == ERFBCType::ext_dir) {
862  ParallelFor(lo_y_dom_face, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
863  rho_v_rhs(i,j,k) = zero;
864  });
865  } else if (bc_ptr_h[BCVars::yvel_bc].lo(1) == ERFBCType::ext_dir_upwind) {
866  ParallelFor(lo_y_dom_face, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
867  if (v(i,j,k) >= zero) {
868  rho_v_rhs(i,j,k) = zero;
869  }
870  });
871  }
872  }
873  if (bx.bigEnd(1) == domain.bigEnd(1)) {
874  Box hi_y_dom_face(bx); hi_y_dom_face.setSmall(1,bx.bigEnd(1)+1); hi_y_dom_face.setBig(1,bx.bigEnd(1)+1);
875  if (bc_ptr_h[BCVars::yvel_bc].hi(1) == ERFBCType::ext_dir) {
876  ParallelFor(hi_y_dom_face, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
877  rho_v_rhs(i,j,k) = zero;
878  });
879  } else if (bc_ptr_h[BCVars::yvel_bc].hi(1) == ERFBCType::ext_dir_upwind) {
880  ParallelFor(hi_y_dom_face, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
881  if (v(i,j,k) <= zero) {
882  rho_v_rhs(i,j,k) = zero;
883  }
884  });
885  }
886  }
887 
888  ParallelFor(tbz, [=] AMREX_GPU_DEVICE (int i, int j, int k)
889  { // z-momentum equation
890 
891  Real gpz = gpz_arr(i,j,k);
892 
893  Real q = (l_use_moisture) ? myhalf * (qt_arr(i,j,k) + qt_arr(i,j,k-1)) : zero;
894 
895  rho_w_rhs(i, j, k) += (-gpz - abl_pressure_grad[2] + buoyancy_arr(i,j,k)) / (one + q) + zmom_src_arr(i,j,k);
896 
897  if (l_moving_terrain) {
898  rho_w_rhs(i, j, k) *= myhalf * (detJ_arr(i,j,k) + detJ_arr(i,j,k-1));
899  }
900  });
901 
902  auto const lo = lbound(bx);
903  auto const hi = ubound(bx);
904 
905  // Note: the logic below assumes no tiling in z!
906  if (level > 0) {
907 
908  const Array4<const Real>& rho_w_rhs_crse = zmom_crse_rhs->const_array(mfi);
909 
910  Box b2d = bx; b2d.setRange(2,0);
911 
912  if (lo.z > klo) {
913  ParallelFor(b2d, [=] AMREX_GPU_DEVICE (int i, int j, int ) // bottom of box but not of domain
914  {
915  rho_w_rhs(i,j,lo.z) = rho_w_rhs_crse(i,j,lo.z);
916  });
917  }
918 
919  if (hi.z < khi+1) {
920  ParallelFor(b2d, [=] AMREX_GPU_DEVICE (int i, int j, int ) // top of box but not of domain
921  {
922  rho_w_rhs(i,j,hi.z+1) = rho_w_rhs_crse(i,j,hi.z+1);
923  });
924  }
925  }
926 
927  {
928  BL_PROFILE("slow_rhs_pre_fluxreg");
929  // We only add to the flux registers in the final RK step
930  // NOTE: for now we are only refluxing density not (rho theta) since the latter seems to introduce
931  // a problem at top and bottom boundaries
932  if (l_reflux) {
933  int strt_comp_reflux = (l_fixed_rho) ? 1 : 0;
934  int num_comp_reflux = 1;
935  if (level < finest_level) {
936  fr_as_crse->CrseAdd(mfi,
937  {{AMREX_D_DECL(&(flux[0]), &(flux[1]), &(flux[2]))}},
938  dx, static_cast<Real>(dt), strt_comp_reflux, strt_comp_reflux, num_comp_reflux, RunOn::Device);
939  }
940  if (level > 0) {
941  fr_as_fine->FineAdd(mfi,
942  {{AMREX_D_DECL(&(flux[0]), &(flux[1]), &(flux[2]))}},
943  dx, static_cast<Real>(dt), strt_comp_reflux, strt_comp_reflux, num_comp_reflux, RunOn::Device);
944  }
945 
946  } // two-way coupling
947  } // end profile
948  } // mfi
949  } // OMP
950 }
void AdvectionSrcForRho(const amrex::Box &bx, const amrex::Array4< amrex::Real > &src, const amrex::Array4< const amrex::Real > &rho_u, const amrex::Array4< const amrex::Real > &rho_v, const amrex::Array4< const amrex::Real > &omega, const amrex::Array4< amrex::Real > &avg_xmom, const amrex::Array4< amrex::Real > &avg_ymom, const amrex::Array4< amrex::Real > &avg_zmom, const amrex::Array4< const amrex::Real > &ax_arr, const amrex::Array4< const amrex::Real > &ay_arr, const amrex::Array4< const amrex::Real > &az_arr, const amrex::Array4< const amrex::Real > &detJ, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_my, const amrex::Array4< const amrex::Real > &mf_uy, const amrex::Array4< const amrex::Real > &mf_vx, const amrex::GpuArray< const amrex::Array4< amrex::Real >, AMREX_SPACEDIM > &flx_arr, const bool fixed_rho)
void AdvectionSrcForScalars(const amrex::Box &bx, const int icomp, const int ncomp, const amrex::Array4< const amrex::Real > &avg_xmom, const amrex::Array4< const amrex::Real > &avg_ymom, const amrex::Array4< const amrex::Real > &avg_zmom, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< amrex::Real > &src, const amrex::Array4< const amrex::Real > &vf_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_my, const AdvType horiz_adv_type, const AdvType vert_adv_type, const amrex::Real horiz_upw_frac, const amrex::Real vert_upw_frac, const amrex::GpuArray< const amrex::Array4< amrex::Real >, AMREX_SPACEDIM > &flx_arr, const amrex::Box &domain, const amrex::BCRec *bc_ptr_h)
void AdvectionSrcForMom(const amrex::MFIter &mfi, const amrex::Box &bx, const amrex::Box &bxx, const amrex::Box &bxy, const amrex::Box &bxz, const amrex::Vector< amrex::Box > &bxx_grown, const amrex::Vector< amrex::Box > &bxy_grown, const amrex::Vector< amrex::Box > &bxz_grown, const amrex::Array4< amrex::Real > &rho_u_rhs, const amrex::Array4< amrex::Real > &rho_v_rhs, const amrex::Array4< amrex::Real > &rho_w_rhs, const amrex::Array4< const amrex::Real > &rho, const amrex::Array4< const amrex::Real > &u, const amrex::Array4< const amrex::Real > &v, const amrex::Array4< const amrex::Real > &w, const amrex::Array4< const amrex::Real > &rho_u, const amrex::Array4< const amrex::Real > &rho_v, const amrex::Array4< const amrex::Real > &Omega, const amrex::Array4< const amrex::Real > &z_nd, const amrex::Array4< const amrex::Real > &ax, const amrex::Array4< const amrex::Real > &ay, const amrex::Array4< const amrex::Real > &az, const amrex::Array4< const amrex::Real > &detJ, amrex::Gpu::DeviceVector< amrex::Real > &stretched_dz_d, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_ux, const amrex::Array4< const amrex::Real > &mf_vx, const amrex::Array4< const amrex::Real > &mf_my, const amrex::Array4< const amrex::Real > &mf_uy, const amrex::Array4< const amrex::Real > &mf_vy, const AdvType horiz_adv_type, const AdvType vert_adv_type, const amrex::Real horiz_upw_frac, const amrex::Real vert_upw_frac, MeshType &mesh_type, TerrainType &terrain_type, const eb_ &ebfact, amrex::GpuArray< amrex::Array4< amrex::Real >, AMREX_SPACEDIM > &flx_u_arr, amrex::GpuArray< amrex::Array4< amrex::Real >, AMREX_SPACEDIM > &flx_v_arr, amrex::GpuArray< amrex::Array4< amrex::Real >, AMREX_SPACEDIM > &flx_w_arr, const amrex::Vector< amrex::iMultiFab > &physbnd_mask, const bool already_on_centroids, const int lo_z_face, const int hi_z_face, const amrex::Box &domain, const amrex::BCRec *bc_ptr_h)
constexpr amrex::Real one
Definition: ERF_Constants.H:9
constexpr amrex::Real zero
Definition: ERF_Constants.H:8
constexpr amrex::Real myhalf
Definition: ERF_Constants.H:13
@ tau12
Definition: ERF_DataStruct.H:32
@ tau23
Definition: ERF_DataStruct.H:32
@ tau33
Definition: ERF_DataStruct.H:32
@ tau22
Definition: ERF_DataStruct.H:32
@ tau11
Definition: ERF_DataStruct.H:32
@ tau32
Definition: ERF_DataStruct.H:32
@ tau31
Definition: ERF_DataStruct.H:32
@ tau21
Definition: ERF_DataStruct.H:32
@ tau13
Definition: ERF_DataStruct.H:32
@ nvars
Definition: ERF_DataStruct.H:98
@ v_x
Definition: ERF_DataStruct.H:24
@ u_y
Definition: ERF_DataStruct.H:25
@ v_y
Definition: ERF_DataStruct.H:25
@ m_y
Definition: ERF_DataStruct.H:25
@ u_x
Definition: ERF_DataStruct.H:24
@ m_x
Definition: ERF_DataStruct.H:24
void DiffusionSrcForMom(const amrex::Box &bxx, const amrex::Box &bxy, const amrex::Box &bxz, const amrex::Array4< amrex::Real > &rho_u_rhs, const amrex::Array4< amrex::Real > &rho_v_rhs, const amrex::Array4< amrex::Real > &rho_w_rhs, const amrex::Array4< const amrex::Real > &tau11, const amrex::Array4< const amrex::Real > &tau22, const amrex::Array4< const amrex::Real > &tau33, const amrex::Array4< const amrex::Real > &tau12, const amrex::Array4< const amrex::Real > &tau21, const amrex::Array4< const amrex::Real > &tau13, const amrex::Array4< const amrex::Real > &tau31, const amrex::Array4< const amrex::Real > &tau23, const amrex::Array4< const amrex::Real > &tau32, const amrex::Array4< const amrex::Real > &detJ_arr, const amrex::Gpu::DeviceVector< amrex::Real > &stretched_dz_d, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxInv, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_ux, const amrex::Array4< const amrex::Real > &mf_vx, const amrex::Array4< const amrex::Real > &mf_my, const amrex::Array4< const amrex::Real > &mf_uy, const amrex::Array4< const amrex::Real > &mf_vy, const bool use_stretched_dz, const bool use_variable_dz)
void DiffusionSrcForState_S(const amrex::Box &bx, const amrex::Box &domain, int start_comp, int num_comp, const amrex::Array4< const amrex::Real > &u, const amrex::Array4< const amrex::Real > &v, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< amrex::Real > &cell_rhs, const amrex::Array4< amrex::Real > &xflux, const amrex::Array4< amrex::Real > &yflux, const amrex::Array4< amrex::Real > &zflux, const amrex::Gpu::DeviceVector< amrex::Real > &stretched_dz_d, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxInv, const amrex::Array4< const amrex::Real > &SmnSmn_a, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_ux, const amrex::Array4< const amrex::Real > &mf_vx, const amrex::Array4< const amrex::Real > &mf_my, const amrex::Array4< const amrex::Real > &mf_uy, const amrex::Array4< const amrex::Real > &mf_vy, amrex::Array4< amrex::Real > &hfx_z, amrex::Array4< amrex::Real > &qfx1_z, amrex::Array4< amrex::Real > &qfx2_z, amrex::Array4< amrex::Real > &diss, const amrex::Array4< const amrex::Real > &mu_turb, const SolverChoice &solverChoice, const int level, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > grav_gpu, const amrex::BCRec *bc_ptr, const bool use_SurfLayer, const amrex::Real implicit_fac)
void DiffusionSrcForState_T(const amrex::Box &bx, const amrex::Box &domain, int start_comp, int num_comp, const bool &rotate, const amrex::Array4< const amrex::Real > &u, const amrex::Array4< const amrex::Real > &v, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< amrex::Real > &cell_rhs, const amrex::Array4< amrex::Real > &xflux, const amrex::Array4< amrex::Real > &yflux, const amrex::Array4< amrex::Real > &zflux, const amrex::Array4< const amrex::Real > &z_nd, const amrex::Array4< const amrex::Real > &z_cc, const amrex::Array4< const amrex::Real > &ax, const amrex::Array4< const amrex::Real > &ay, const amrex::Array4< const amrex::Real > &az, const amrex::Array4< const amrex::Real > &detJ, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxInv, const amrex::Array4< const amrex::Real > &SmnSmn_a, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_ux, const amrex::Array4< const amrex::Real > &mf_vx, const amrex::Array4< const amrex::Real > &mf_my, const amrex::Array4< const amrex::Real > &mf_uy, const amrex::Array4< const amrex::Real > &mf_vy, amrex::Array4< amrex::Real > &hfx_x, amrex::Array4< amrex::Real > &hfx_y, amrex::Array4< amrex::Real > &hfx_z, amrex::Array4< amrex::Real > &qfx1_x, amrex::Array4< amrex::Real > &qfx1_y, amrex::Array4< amrex::Real > &qfx1_z, amrex::Array4< amrex::Real > &qfx2_z, amrex::Array4< amrex::Real > &diss, const amrex::Array4< const amrex::Real > &mu_turb, const SolverChoice &solverChoice, const int level, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > grav_gpu, const amrex::BCRec *bc_ptr, const bool use_SurfLayer, const amrex::Real implicit_fac)
void DiffusionSrcForState_N(const amrex::Box &bx, const amrex::Box &domain, int start_comp, int num_comp, const amrex::Array4< const amrex::Real > &u, const amrex::Array4< const amrex::Real > &v, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< amrex::Real > &cell_rhs, const amrex::Array4< amrex::Real > &xflux, const amrex::Array4< amrex::Real > &yflux, const amrex::Array4< amrex::Real > &zflux, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &SmnSmn_a, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_ux, const amrex::Array4< const amrex::Real > &mf_vx, const amrex::Array4< const amrex::Real > &mf_my, const amrex::Array4< const amrex::Real > &mf_uy, const amrex::Array4< const amrex::Real > &mf_vy, amrex::Array4< amrex::Real > &hfx_z, amrex::Array4< amrex::Real > &qfx1_z, amrex::Array4< amrex::Real > &qfx2_z, amrex::Array4< amrex::Real > &diss, const amrex::Array4< const amrex::Real > &mu_turb, const SolverChoice &solverChoice, const int level, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > grav_gpu, const amrex::BCRec *bc_ptr, const bool use_SurfLayer, const amrex::Real implicit_fac)
void DiffusionSrcForState_EB(const amrex::Box &bx, const amrex::Box &domain, int start_comp, int num_comp, const amrex::Array4< const amrex::Real > &u, const amrex::Array4< const amrex::Real > &v, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< amrex::Real > &cell_rhs, const amrex::Array4< amrex::Real > &xflux, const amrex::Array4< amrex::Real > &yflux, const amrex::Array4< amrex::Real > &zflux, const amrex::Array4< const amrex::EBCellFlag > &cfg_arr, const amrex::Array4< const amrex::Real > &ax_arr, const amrex::Array4< const amrex::Real > &ay_arr, const amrex::Array4< const amrex::Real > &az_arr, const amrex::Array4< const amrex::Real > &detJ, const amrex::Array4< const amrex::Real > &barea_arr, const amrex::Array4< const amrex::Real > &bcent_arr, const amrex::Real *dx_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, amrex::Array4< amrex::Real > &hfx_z, amrex::Array4< amrex::Real > &qfx1_z, amrex::Array4< amrex::Real > &qfx2_z, amrex::Array4< amrex::Real > &hfx_EB, const amrex::Array4< const amrex::Real > &mu_turb, const SolverChoice &solverChoice, const int level, const amrex::BCRec *bc_ptr, const bool use_SurfLayer)
void DiffusionSrcForMom_EB(const amrex::MFIter &mfi, [[maybe_unused]] const amrex::Box &domain, const amrex::Box &bxx, const amrex::Box &bxy, const amrex::Box &bxz, const amrex::Array4< amrex::Real > &rho_u_rhs, const amrex::Array4< amrex::Real > &rho_v_rhs, const amrex::Array4< amrex::Real > &rho_w_rhs, const amrex::Array4< const amrex::Real > &u_arr, const amrex::Array4< const amrex::Real > &v_arr, const amrex::Array4< const amrex::Real > &w_arr, const amrex::Array4< const amrex::Real > &tau11, const amrex::Array4< const amrex::Real > &tau22, const amrex::Array4< const amrex::Real > &tau33, const amrex::Array4< const amrex::Real > &tau12, const amrex::Array4< const amrex::Real > &tau13, const amrex::Array4< const amrex::Real > &tau23, const amrex::Array4< const amrex::Real > &u_tau_eb13, const amrex::Array4< const amrex::Real > &u_tau_eb23, const amrex::Array4< const amrex::Real > &v_tau_eb13, const amrex::Array4< const amrex::Real > &v_tau_eb23, const amrex::Array4< const amrex::Real > &w_tau_eb13, const amrex::Array4< const amrex::Real > &w_tau_eb23, const amrex::Real *dx_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxInv, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_ux, const amrex::Array4< const amrex::Real > &mf_vx, const amrex::Array4< const amrex::Real > &mf_my, const amrex::Array4< const amrex::Real > &mf_uy, const amrex::Array4< const amrex::Real > &mf_vy, const SolverChoice &solverChoice, const eb_ &ebfact, [[maybe_unused]] const amrex::BCRec *bc_ptr)
void EBAdvectionSrcForScalars(const amrex::Box &bx, const int icomp, const int ncomp, const amrex::Array4< const amrex::Real > &avg_xmom, const amrex::Array4< const amrex::Real > &avg_ymom, const amrex::Array4< const amrex::Real > &avg_zmom, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< amrex::Real > &src, const amrex::Array4< const int > &mask_arr, const amrex::Array4< const amrex::EBCellFlag > &cfg_arr, const amrex::Array4< const amrex::Real > &ax_arr, const amrex::Array4< const amrex::Real > &ay_arr, const amrex::Array4< const amrex::Real > &az_arr, const amrex::Array4< const amrex::Real > &fcx_arr, const amrex::Array4< const amrex::Real > &fcy_arr, const amrex::Array4< const amrex::Real > &fcz_arr, const amrex::Array4< const amrex::Real > &vf_arr, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_my, const AdvType horiz_adv_type, const AdvType vert_adv_type, const amrex::Real horiz_upw_frac, const amrex::Real vert_upw_frac, const amrex::GpuArray< const amrex::Array4< amrex::Real >, AMREX_SPACEDIM > &flx_arr, const amrex::Box &domain, const amrex::BCRec *bc_ptr_h, bool already_on_centroids)
void EBAdvectionSrcForRho(const amrex::Box &bx, const amrex::Array4< amrex::Real > &src, const amrex::Array4< const amrex::Real > &rho_u, const amrex::Array4< const amrex::Real > &rho_v, const amrex::Array4< const amrex::Real > &omega, const amrex::Array4< amrex::Real > &avg_xmom, const amrex::Array4< amrex::Real > &avg_ymom, const amrex::Array4< amrex::Real > &avg_zmom, const amrex::Array4< const int > &mask_arr, const amrex::Array4< const amrex::EBCellFlag > &cfg_arr, const amrex::Array4< const amrex::Real > &ax_arr, const amrex::Array4< const amrex::Real > &ay_arr, const amrex::Array4< const amrex::Real > &az_arr, const amrex::Array4< const amrex::Real > &fcx_arr, const amrex::Array4< const amrex::Real > &fcy_arr, const amrex::Array4< const amrex::Real > &fcz_arr, const amrex::Array4< const amrex::Real > &detJ, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &mf_mx, const amrex::Array4< const amrex::Real > &mf_my, const amrex::Array4< const amrex::Real > &mf_uy, const amrex::Array4< const amrex::Real > &mf_vx, const amrex::GpuArray< const amrex::Array4< amrex::Real >, AMREX_SPACEDIM > &flx_arr, const bool fixed_rho, bool already_on_centroids)
@ tau_eb23
Definition: ERF_EBStruct.H:16
@ tau_eb13
Definition: ERF_EBStruct.H:16
@ yface
Definition: ERF_EBStruct.H:20
@ zface
Definition: ERF_EBStruct.H:20
@ xface
Definition: ERF_EBStruct.H:20
const Real l_vert_implicit_fac
Definition: ERF_ImplicitPost.H:6
#define Rho_comp
Definition: ERF_IndexDefines.H:36
#define RhoTheta_comp
Definition: ERF_IndexDefines.H:37
AdvType
Definition: ERF_IndexDefines.H:260
amrex::GpuArray< Real, AMREX_SPACEDIM > dxInv
Definition: ERF_InitCustomPertVels_ParticleTests.H:17
const Real dx
Definition: ERF_InitCustomPert_ABL.H:23
const int khi
Definition: ERF_InitCustomPert_Bubble.H:21
AMREX_ALWAYS_ASSERT(bx.length()[2]==khi+1)
void erf_make_tau_terms(int level, int nrk, const Vector< BCRec > &domain_bcs_type_h, const MultiFab &z_phys_nd, Vector< MultiFab > &S_data, const MultiFab &xvel, const MultiFab &yvel, const MultiFab &zvel, Vector< std::unique_ptr< MultiFab >> &Tau_lev, Vector< std::unique_ptr< MultiFab >> &Tau_corr_lev, MultiFab *SmnSmn, MultiFab *eddyDiffs, const Geometry geom, const SolverChoice &solverChoice, std::unique_ptr< SurfaceLayer > &, Gpu::DeviceVector< Real > &stretched_dz_d, const MultiFab &detJ, Vector< std::unique_ptr< MultiFab >> &mapfac, const MultiFab &ax, const MultiFab &ay, const MultiFab &az, const eb_ &ebfact)
Definition: ERF_MakeTauTerms.cpp:12
ParallelFor(grown_box, [=] AMREX_GPU_DEVICE(int i, int j, int k) { qrcuten_arr(i, j, k)=Real(0);qscuten_arr(i, j, k)=Real(0);qicuten_arr(i, j, k)=Real(0);})
Real w
Definition: ERF_Plotfile2DInterpolator.cpp:19
amrex::Real Real
Definition: ERF_ShocInterface.H:19
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real OmegaFromW(int &i, int &j, int &k, amrex::Real w, const amrex::Array4< const amrex::Real > &u_arr, const amrex::Array4< const amrex::Real > &v_arr, const amrex::Array4< const amrex::Real > &mf_u, const amrex::Array4< const amrex::Real > &mf_v, const amrex::Array4< const amrex::Real > &z_nd, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &dxInv)
Definition: ERF_TerrainMetrics.H:414
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_zeta_AtIface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:104
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_zeta_AtJface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:144
AMREX_FORCE_INLINE amrex::IntVect TileNoZ()
Definition: ERF_TileNoZ.H:11
void set_diff_stresses() const
Definition: ERF_ShocDriver.cpp:805
bool owns_scalar_surface_fluxes() const
Definition: ERF_ShocDriver.cpp:893
bool needs_host_surface_momentum_stresses() const
Definition: ERF_ShocDriver.cpp:905
void set_eddy_diffs() const
Definition: ERF_ShocDriver.cpp:784
const std::unique_ptr< amrex::EBFArrayBoxFactory > & get_const_factory() const noexcept
Definition: ERF_EB.H:46
@ yvel_bc
Definition: ERF_IndexDefines.H:103
@ xvel_bc
Definition: ERF_IndexDefines.H:102
@ ext_dir
Definition: ERF_IndexDefines.H:248
@ ext_dir_upwind
Definition: ERF_IndexDefines.H:256
@ gpz
Definition: ERF_IndexDefines.H:187
@ gpy
Definition: ERF_IndexDefines.H:186
@ gpx
Definition: ERF_IndexDefines.H:185
@ NumTypes
Definition: ERF_IndexDefines.H:197
@ ymom
Definition: ERF_IndexDefines.H:195
@ cons
Definition: ERF_IndexDefines.H:193
@ zmom
Definition: ERF_IndexDefines.H:196
@ xmom
Definition: ERF_IndexDefines.H:194
@ qt
Definition: ERF_Kessler.H:29
@ ng
Definition: ERF_Morrison.H:49
@ xvel
Definition: ERF_IndexDefines.H:176
@ zvel
Definition: ERF_IndexDefines.H:178
@ yvel
Definition: ERF_IndexDefines.H:177
@ q
Definition: ERF_WSM6.H:182
AdvType dycore_vert_adv_type
Definition: ERF_AdvStruct.H:420
amrex::Real dycore_vert_upw_frac
Definition: ERF_AdvStruct.H:430
AdvType dycore_horiz_adv_type
Definition: ERF_AdvStruct.H:419
amrex::Real dycore_horiz_upw_frac
Definition: ERF_AdvStruct.H:429
Definition: ERF_DiffStruct.H:19
MolecDiffType molec_diff_type
Definition: ERF_DiffStruct.H:84
Definition: ERF_EBStruct.H:27
EBBoundaryType eb_boundary_type
Definition: ERF_EBStruct.H:59
static MeshType mesh_type
Definition: ERF_DataStruct.H:1239
DiffChoice diffChoice
Definition: ERF_DataStruct.H:1248
amrex::Real gravity
Definition: ERF_DataStruct.H:1327
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: ERF_DataStruct.H:1431
bool implicit_thermal_diffusion
Definition: ERF_DataStruct.H:1277
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:1251
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:1257
AdvChoice advChoice
Definition: ERF_DataStruct.H:1247
MoistureType moisture_type
Definition: ERF_DataStruct.H:1424
static TerrainType terrain_type
Definition: ERF_DataStruct.H:1230
amrex::Vector< int > fixed_density
Definition: ERF_DataStruct.H:1258
amrex::Vector< amrex::Vector< amrex::Real > > vert_implicit_fac
Definition: ERF_DataStruct.H:1274
bool use_rotate_surface_flux
Definition: ERF_DataStruct.H:1357
EBChoice ebChoice
Definition: ERF_DataStruct.H:1252
CouplingType coupling_type
Definition: ERF_DataStruct.H:1423
Definition: ERF_TurbStruct.H:82
PBLType pbl_type
Definition: ERF_TurbStruct.H:541
bool use_keqn
Definition: ERF_TurbStruct.H:578
RANSType rans_type
Definition: ERF_TurbStruct.H:536
bool uses_eamxx_shoc() const noexcept
Definition: ERF_TurbStruct.H:543
bool uses_native_shoc() const noexcept
Definition: ERF_TurbStruct.H:548
LESType les_type
Definition: ERF_TurbStruct.H:494
bool use_kturb
Definition: ERF_TurbStruct.H:577
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